RetrogeneDB ID: | retro_sscr_931 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:37724095..37724653(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000001575 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 72.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYN-GVGRC |
MVRY..DPENPT.SCKSRGSNL.VH.KN..ETAQAIK.M.IRKATK.LKD..L.KQ.VP..R...GVG.. | |
Retrocopy | MVRYVQDPENPTRSCKSRGSNLHVHLKNPHETAQAIKSMRIRKATKHLKDVPLRKQSVPVHRNSGGVGYV |
Parental | AQAKQWGWTQGRWPKKSAE-FLLHMLKNAESNAELKGL-DVDSLVIEHIQVNKAPKMRRR-TYRAH--GR |
.QAKQWGWTQG.WPKKSA..FLLH.LKNAESN...KGL.D.DS.VIEHIQVNKAPK.......R.H..G. | |
Retrocopy | PQAKQWGWTQGWWPKKSAD<FLLHVLKNAESNVKFKGL<DADSVVIEHIQVNKAPKIHSEGPNRPHGHGQ |
Parental | INPYMSSPCHIEMILTEKEQIVPKPEEEVA-QKKKISQKKLKKQKLMARE |
INPYMSSPC..EMI.TEKE.IVPKPEEEVA....K.SQKKLKKQK.MARE | |
Retrocopy | INPYMSSPCPTEMIPTEKEHIVPKPEEEVA<TRRKRSQKKLKKQKFMARE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 409 .48 RPM |
SRP014902_testis | 0 .00 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .03 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .00 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .00 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .00 RPM | 949 .78 RPM |