RetrogeneDB ID: | retro_sscr_1067 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:91771817..91772368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 78.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MVRYSLDPENPTKSCKS-RGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYN-GVGR |
MV.YSLD.ENPT.SCKS.R.SNLRVH.K....TAQA.K.MHI.KATKY.KD.T..KQC.PF..YN.GVGR | |
Retrocopy | MVHYSLDSENPTQSCKS<RDSNLRVHIKKAYDTAQAVKDMHI*KATKYWKDVTI*KQCAPFHFYNSGVGR |
Parental | CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPY |
CAQAKQWGWT.G.WPKKSA.FLLHMLKNAE.NAELKGLDV.SLVIEHIQVNKAPKM..RTYRAH..INPY | |
Retrocopy | CAQAKQWGWTEGQWPKKSAGFLLHMLKNAERNAELKGLDVYSLVIEHIQVNKAPKMQCRTYRAHSQINPY |
Parental | MSSPCHIEMILTEKE-QIVPKPEEEVAQKKKISQKKL-KKQKLMARE |
MS.PCH..MILTEKE..IVPKPEEEV.QKKKISQ.KL.KKQK.MA.E | |
Retrocopy | MSCPCHMGMILTEKE<EIVPKPEEEVTQKKKISQQKL>KKQKRMA*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 409 .48 RPM |
SRP014902_testis | 0 .00 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .00 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .00 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .06 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .00 RPM | 949 .78 RPM |