RetrogeneDB ID: | retro_lafr_402 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_15:2918433..2918998(+) | ||
Located in intron of: | ENSLAFG00000017300 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLA2G12A | ||
Ensembl ID: | ENSLAFG00000000852 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MAPLVRPRSALALL-ILVLAAAVRCQAQAQTTDWRATLKTIRNGVHR-IDTYLNAALDLLGGEDGLCQYK |
MAPL....S...L..IL......RCQ.QA.TT..RATLKTI.NGVH...D.YLNA..D.LGGE.GLCQ.K | |
Retrocopy | MAPLLQVQSTPSLR<ILLPVTTLRCQGQA*TTGRRATLKTIWNGVHK<VDAYLNATVDPLGGEAGLCQCK |
Parental | CNDGSKPYPRHGYKPSPPNGCGSPLFGVH-LNIGIPSLTKCCNQHDRCYETCGKSKNDCDEAFQY-CLSK |
....SKP.P..GYK.SP.NG.GSP..G.H.L....P....C..QHDRC..TC.K.KNDC.E.F...CL.. | |
Retrocopy | YRGRSKPHPCYGYKLSPLNGRGSPCLGSH<LTLASPP-DECRKQHDRCRRTCVKRKNDCAEEFRT>CL-Q |
Parental | ICRDVQKTLGLAQHVQACETTVELLFDSVIHLGCKPYLDSQRAACWCRYEEKTDL |
ICR.VQ.TLGLA..VQACET.V.LL.DSV.H..........RA.CWCR.EEK.DL | |
Retrocopy | ICRGVQETLGLAKRVQACETAVGLLCDSVLHI*AVNHA*IARAGCWCRREEKNDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies | |
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies |
retro_lafr_402 , retro_lafr_718,
|
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |