RetrogeneDB ID: | retro_ogar_670 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873525.1:45124521..45124949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLA2G12A | ||
Ensembl ID: | ENSOGAG00000004686 | ||
Aliases: | None | ||
Description: | phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554] |
Percent Identity: | 84.72 % |
Parental protein coverage: | 75.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TYLNAALDLLGGEDGLCQYKCSDGSKPFPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQHDRCYET |
T.LN..LDLLGGED.L.QYKCSDGSK.FPRYGYKPSP.NGC.SPLFGVHLN..IPSLTKCCNQHD.CYET | |
Retrocopy | TQLNTTLDLLGGEDVLSQYKCSDGSKSFPRYGYKPSPLNGCASPLFGVHLNVSIPSLTKCCNQHDKCYET |
Parental | CGK-SKNDCDEEFQYCLSKICRNVQKTLGLAQHVQACETTVELLFDSVIHLGCKPYLDSQRAACRCRYEE |
CGK..KNDCDEEFQYCLSKICRNVQKTL.LA.HVQA.E.TVELLFDSVIH.G.KP.LDSQRAACRC.YEE | |
Retrocopy | CGK<NKNDCDEEFQYCLSKICRNVQKTLRLAHHVQAYEATVELLFDSVIHIGYKPFLDSQRAACRCCYEE |
Parental | KTDL |
K.DL | |
Retrocopy | KMDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies | |
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy |
retro_ogar_670 ,
|
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |