RetrogeneDB ID: | retro_vpac_466 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_2240:131519..131867(-) | ||
Located in intron of: | ENSVPAG00000000183 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLA2G12A | ||
Ensembl ID: | ENSVPAG00000009842 | ||
Aliases: | None | ||
Description: | phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554] |
Percent Identity: | 55.83 % |
Parental protein coverage: | 61.7 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | NAALDLL-GGEDG-LCQH-KCSDGSKPFPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQH-DRCYE |
.AALDLL.G..D...CQ..KC.D.SKPFP..G.KPS.P..CGSPL.GVHLNI.IPSLT.CC.QH...C.E | |
Retrocopy | SAALDLL<GNKDS<FCQLLKCNDESKPFPSCGHKPSSPKECGSPLCGVHLNIDIPSLTMCCIQH<PLCCE |
Parental | TCGKSKNDCDEEFQFCLSKICRDVQKTLGLAQHVQACETTVELLFDSVIH |
T.G.SKN..D...Q..LSKIC..VQKTL.L.Q.V........L......H | |
Retrocopy | TYGQSKNCYD*KPQYHLSKIC*NVQKTLSLVQQVHNL*HKAALIL*KTLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies | |
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |
retro_vpac_466 ,
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