RetrogeneDB ID: | retro_mmus_2368 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:80440367..80440881(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082555 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pla2g12a | ||
Ensembl ID: | ENSMUSG00000027999 | ||
Aliases: | Pla2g12a, 2310004B05Rik, GXII, GXII-1, GXII-1-PLA2, Pla2g12, Rossy, mGXII-1 | ||
Description: | phospholipase A2, group XIIA [Source:MGI Symbol;Acc:MGI:1913600] |
Percent Identity: | 53.45 % |
Parental protein coverage: | 89.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | RPAPARSPALLLLLLLATARGQEQDQTTDWRATLKTIRNGIHKIDTYLNAALDLLGGEDGLCQYKCSDGS |
.P.P...P...LLLLLAT..G..Q.Q.T.WR.TLK.I.N..H.I...L...LDLLG..D..CQY.CS..S | |
Retrocopy | KPVPQPHPGPVLLLLLATTSGYKQVQITTWRVTLKRICNVMHSIYMFLEVVLDLLGENDRFCQYDCSEES |
Parental | KPVPRYGYKPSPPNGCGS-PLFGVHLNIGIPSLTKCCNQHDRCYETCGKSKNDC-DEEFQYCLSKICRDV |
KP.P...Y.PS.PNG..S.P.FG.........LTKC.NQ..RCY.TCGKSKN...D.EF.YCLSKI..D. | |
Retrocopy | KPFPC*RYNPSQPNGEYS<PWFGIQQKNDTSFLTKC*NQNYRCYDTCGKSKNNL<DNEF*YCLSKIF*DA |
Parental | QKTLGLSQNVQACETTVELLFDSVIH-LGCKPYL |
QKTLGL.QNVQ..E...E....S..H.L..KP.L | |
Retrocopy | QKTLGLAQNVQEKEDRMETHPKSTSHFLTLKPVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .99 RPM |
SRP007412_heart | 0 .00 RPM | 34 .31 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .11 RPM |
SRP007412_liver | 0 .00 RPM | 8 .77 RPM |
SRP007412_testis | 0 .00 RPM | 15 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies | |
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy |
retro_mmus_2368 ,
|
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |