Parental gene:

PLA2G12A, ENSCJAG00000016169

Aliases:None
Description:phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:83949373..83971438(+)


>ENSCJAG00000016169
ATGGCCCTGCTCCCGCTCCCCGCGCTCATCCTGCTCCTCCTCACGGCCGCTGTTGTCAGGTGCCAGGAGCAGGCCCAGAC
CACCGACTGGAGGGCCACCCTGAAGACCATCCGTAACGGCGTTCACAAGATAGACACGTACCTGAACGCCGCCTTGGACC
TCTTGGGAGGCGAGGATGGTCTCTGCCAGTATAAATGCAGTGACGGATCTAAGCCTTTCCCACGTTATGGTTATAAACCC
TCCCCACCGAATGGATGTGGCTCTCCACTGTTTGGTGTTCATCTTAATATTGGTATCCCTTCCCTGACAAAATGCTGCAA
CCAACACGATAGGTGCTATGAGACCTGTGGCAAAAGCAAGAATGACTGCGACGAGGAGTTCCAGTATTGCCTCTCCAAGA
TCTGTCGAGATGTACAGAAAACACTAGGACTAACTCAGCATGTTCAGGCCTGTGAAACAGCAGTGGAACTCTTGTTTGAC
AGTGTTATACATTTAGGTTGTAAACCATATCTGGACAGCCAGCGAGCCGCATGCAGGTGTCATTATGAAGAAAAAACCGA
TCTTTAG

Library Parental gene expression (RPM)
SRP051959_colon 13 .58 RPM
SRP051959_heart 21 .43 RPM
SRP051959_kidney 31 .22 RPM
SRP051959_liver 18 .58 RPM
SRP051959_lung 21 .15 RPM
SRP051959_lymph_node 22 .44 RPM
SRP051959_skeletal_muscle 10 .31 RPM
SRP051959_spleen 20 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015230 ortholog_one2one 1 retrogene
retro_btau_1557,
Dasypus novemcinctus ENSDNOG00000016573 ortholog_one2one 7 retrogenes
retro_dnov_1694, retro_dnov_172, retro_dnov_1856, retro_dnov_1930, retro_dnov_2286, retro_dnov_2572, retro_dnov_434,
Homo sapiens ENSG00000123739 ortholog_one2one 1 retrogene
retro_hsap_153,
Gorilla gorilla ENSGGOG00000001082 ortholog_one2one 2 retrogenes
retro_ggor_242, retro_ggor_929,
Loxodonta africana ENSLAFG00000000852 ortholog_one2one 2 retrogenes
retro_lafr_402, retro_lafr_718,
Mustela putorius furo ENSMPUG00000008637 ortholog_one2one 1 retrogene
retro_mputfur_964,
Mus musculus ENSMUSG00000027999 ortholog_one2one 1 retrogene
retro_mmus_2368,
Otolemur garnettii ENSOGAG00000004686 ortholog_one2one 1 retrogene
retro_ogar_670,
Ochotona princeps ENSOPRG00000014505 ortholog_one2many 2 retrogenes
retro_opri_30, retro_opri_921,
Pan troglodytes ENSPTRG00000016362 ortholog_one2one 1 retrogene
retro_ptro_817,
Sus scrofa ENSSSCG00000009139 ortholog_one2one 3 retrogenes
retro_sscr_622, retro_sscr_623, retro_sscr_670,
Tarsius syrichta ENSTSYG00000004756 ortholog_one2one 4 retrogenes
retro_tsyr_1366, retro_tsyr_376, retro_tsyr_487, retro_tsyr_493,
Vicugna pacos ENSVPAG00000009842 ortholog_one2one 1 retrogene
retro_vpac_466,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1992 86.01 75.53
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2. retro_cjac_3936 79.25 82.45
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Download FASTA sequences of all ENSCJAG00000016169 retrocopies