RetrogeneDB ID: | retro_tsyr_493 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_127480:3757..4111(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLA2G12A | ||
Ensembl ID: | ENSTSYG00000004756 | ||
Aliases: | None | ||
Description: | phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554] |
Percent Identity: | 86.44 % |
Parental protein coverage: | 71.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KPFPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQHDRCYETCGKSKNDCDEAFQYCLSKICRDVQK |
K.FPR.GYKPSPPNGCGSPLFGVHLN..IPSLTKCC..H.RC.ETCGKSK.DCDE.F.YCLSKIC.DVQK | |
Retrocopy | KAFPRSGYKPSPPNGCGSPLFGVHLNVAIPSLTKCCSHHVRCFETCGKSKKDCDEVFLYCLSKICQDVQK |
Parental | TLGLTQHVQACETTVELLFDSVIHLGCKPYLDCQRAACRCRYEEKTDL |
TL.L.QH.QACETTVELLFDSVIHLGCKPYLDCQRAACRC.YEEKTDL | |
Retrocopy | TL*LAQHIQACETTVELLFDSVIHLGCKPYLDCQRAACRCCYEEKTDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies | |
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |