RetrogeneDB ID: | retro_dnov_1694 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_268200:345..880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLA2G12A | ||
Ensembl ID: | ENSDNOG00000016573 | ||
Aliases: | None | ||
Description: | phospholipase A2, group XIIA [Source:HGNC Symbol;Acc:18554] |
Percent Identity: | 62.3 % |
Parental protein coverage: | 95.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAVLPRPALALLLLA--AALSCQGEAQ-TTDWRTTLKTIRNGVHKIDT-YLNAALDLLGGEDGLCQYKCS |
MA.LP....A.L.L...A.L..QGEAQ....WR.TLK.I.N...KID...L.....L.GG.D.LCQYK.S | |
Retrocopy | MALLPQTLFAFLFLLPEATLRFQGEAQ>SSNWRATLKIIQNNIYKIDR<VLRRS*HLFGGKDRLCQYKYS |
Parental | DGSKPFPHYDYKPSPPNGCGSPMFGVHLNIGIPSLTKCCNQHD-RCYETCGKSKNDCDEEFQYCLSKICR |
..SKPFP.Y..KPS...GCGS.....HLN.GIPS.TKC.NQHD..CYETC.K.KND.DEEFQYCL.KIC. | |
Retrocopy | NRSKPFPCY--KPSLQSGCGSQLLAFHLNVGIPSQTKC*NQHD>KCYETCSKGKNDGDEEFQYCLNKICQ |
Parental | NVQKTLGLAQHVQACETTVELLFGSVIHLGCKPYLDSQRAACR |
.VQKTL.LAQH.QA.E.T.ELL..SVIHLGCK.Y.DSQRA.CR | |
Retrocopy | DVQKTLRLAQHSQASEKTEELLYDSVIHLGCKIYPDSQRAMCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 14 .59 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .30 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 12 .87 RPM |
SRP012922_liver | 0 .00 RPM | 18 .73 RPM |
SRP012922_lung | 0 .00 RPM | 9 .77 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016169 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016573 | 7 retrocopies |
retro_dnov_1694 , retro_dnov_172, retro_dnov_1856, retro_dnov_1930, retro_dnov_2286, retro_dnov_2572, retro_dnov_434,
|
Homo sapiens | ENSG00000123739 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001082 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000852 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008637 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027999 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004686 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000014505 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016362 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009139 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004756 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000009842 | 1 retrocopy |