RetrogeneDB ID: | retro_mmul_1579 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:30147938..30148858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.11028 | ||
Ensembl ID: | ENSMMUG00000013514 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | ENVFTGQSKIYSYMSPNKCSGMRFPLQEENSVTHHEVKCQG-KPLAGIYRKREEKRNAGNAVRSAMKSEE |
ENVFT..SKIYSYMSPN.CSG.R.PL.EENSVTHH.VKCQG.KPLA.I..KREEK...GNA.RS..KS.E | |
Retrocopy | ENVFTRRSKIYSYMSPNRCSGIRSPLPEENSVTHHGVKCQG<KPLARISKKREEK---GNAIRSTRKSQE |
Parental | QKIKDARRGPLAPFPNQKSEAAEPPKTPPSSCDSTNAAITKQALKK-PIKGKQAPR----KKAQGKTQQN |
QKIK.ARR.PLAPFPNQ.SEAAEPPKT..SSCDSTNAAITKQA.KK.P......PR....KK.QGKTQQ. | |
Retrocopy | QKIKHARRSPLAPFPNQ*SEAAEPPKTVTSSCDSTNAAITKQAPKK>PSRAHSTPRRPLWKKHQGKTQQT |
Parental | RKLTDFYPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGD |
.KL..FYPVR.SSRKSK.ELQSEERK..D.LIE.GK.EGMK.DLIDGKGR..IA.K.FS...FVV..... | |
Retrocopy | GKLSGFYPVRSSSRKSKGELQSEERKIPDDLIEDGKKEGMKNDLIDGKGRDAIAIKHFSQSAFVVK*PRG |
Parental | LIEIT-DAKKREALYAQD-PSTGCYMYYFQYLSKTYC-VDATRETNRLGRLINHSKCGNCQTKLHDIDGV |
.I.I..DAK..EA.YAQD.PS..CY.Y.FQYLSKT.C..DATR.TNRLGRLINHSKCGNC.TKL.DIDG. | |
Retrocopy | FIKIA<DAKMQEAVYAQD<PSGSCYLYCFQYLSKT-C<LDATRDTNRLGRLINHSKCGNC*TKLQDIDGY |
Parental | PHLILIASRDIAAGEELLYDYGDRSKA-SIEAHPWLKH |
...IL..SRD..A.E.LLY..GDRSKA.S.EA...LKH | |
Retrocopy | LTAILNTSRDSEAWEVLLYYCGDRSKA<SLEADGCLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 14 .34 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 14 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .08 RPM |
SRP007412_heart | 0 .06 RPM | 11 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .15 RPM |
SRP007412_liver | 0 .00 RPM | 3 .80 RPM |
SRP007412_testis | 0 .34 RPM | 6 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1347 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000183955 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013514 | 1 retrocopy |
retro_mmul_1579 ,
|
Mus musculus | ENSMUSG00000049327 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031093 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005085 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005598 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001062 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015376 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015884 | 1 retrocopy |