RetrogeneDB ID:

retro_ogar_1217

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873539.1:19294328..19294897(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SETD8
Ensembl ID:ENSOGAG00000031093
Aliases:None
Description:SET domain containing (lysine methyltransferase) 8 [Source:HGNC Symbol;Acc:29489]


Retrocopy-Parental alignment summary:






>retro_ogar_1217
ATCAAGGGCAAGCAGGCCCCTCAGAAAAAGCTCAAGGAAAAACAACAGAATTGCAGACTCATGGATTTCTACCCTGTCCG
AAGAAGCTCCAGGAAGAGCACAGCTGAGTTGCAGTCGGAAGAATGGAAAAGAATAGATGAATTGATGGAGAGTGGGAAGG
AAGAAGGCATGAAGATTGACTTCATTTATGGCAAAGGCAGGGGCCTGATAGCCACAAAGCAATTCTCCCAGAGCGACTTT
GTGGTAGAAAACTATGGGGACCTCATCAAGATCACCAGTGCCAAGAAGCAGGACGCTCTGTGTGCGCAAGACCCCTCCAC
AGGCTGCTACATGTACTATTTCCAGTATTTGAGCAAAACCTGTGTGGATGCACCTAGAGAGACAAACTGCCTGGGAAGGC
AGATCAATCACAGCAAAAGTGAGAACTGCCAAACCAAACTGTACAAAATTCACGTTGTACCTCACCTCATCCTCATCCCT
TCCGGAGACATATAGGCCAGGGAAGAGCTCTTGTGTGACCATGGGGACTGCAACCAGGCTTCCATTGAACCTACCCATGG
CTGAAGCAT

ORF - retro_ogar_1217 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.17 %
Parental protein coverage: 59.44 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIKGKPTPRKKTQGKTQQNRKLTDFYPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGV
IKGK..P.KK...K.QQN..L.DFYPVRRSSRKS.AELQSEE.KRIDEL.ESGKEEGMKID.I.GKGRG.
RetrocopyIKGKQAPQKKLKEK-QQNCRLMDFYPVRRSSRKSTAELQSEEWKRIDELMESGKEEGMKIDFIYGKGRGL
ParentalIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHS
IATKQFS..DFVVE..GDLI.IT.AKK..AL.AQDPSTGCYMYYFQYLSKT.CVDA.RETN.LGR.INHS
RetrocopyIATKQFSQSDFVVENYGDLIKITSAKKQDALCAQDPSTGCYMYYFQYLSKT-CVDAPRETNCLGRQINHS
ParentalKCGNCQTKLHDIDGVPHLILIASRDIEAGEELLYDYGDRSKASIE-AYPWLKH
K..NCQTKL..I..VPHLILI.S.DI.A.EELL.D.GD...ASIE..YPWLKH
RetrocopyKSENCQTKLYKIHVVPHLILIPSGDI*AREELLCDHGDCNQASIE<TYPWLKH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1217 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001839552 retrocopies
Macaca mulatta ENSMMUG000000135141 retrocopy
Mus musculus ENSMUSG000000493272 retrocopies
Otolemur garnettii ENSOGAG00000031093 1 retrocopy
retro_ogar_1217 ,
Pongo abelii ENSPPYG000000050852 retrocopies
Pan troglodytes ENSPTRG000000055981 retrocopy
Rattus norvegicus ENSRNOG000000010624 retrocopies
Sarcophilus harrisii ENSSHAG000000153762 retrocopies
Tursiops truncatus ENSTTRG000000158841 retrocopy



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