RetrogeneDB ID: | retro_ptro_1622 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2A:91449684..91450271(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SETD8 | ||
Ensembl ID: | ENSPTRG00000005598 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.5 % |
Parental protein coverage: | 56.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARGRKMSKPRAVEAAAAAAAVAATAPGPEMVERRGPGRPRTDGENVFTGQSKIYSYMSPNKCSG-MRFPL |
A.GRKMSKPR..EAAAAA...A.TAPG.EMVERRGPGRPRTDGENVFTGQSKIYSYMSPNKCS..MRFPL | |
Retrocopy | AAGRKMSKPRTLEAAAAA---ASTAPGLEMVERRGPGRPRTDGENVFTGQSKIYSYMSPNKCSE<MRFPL |
Parental | QEENSVTHHEVKCQGKPLAGIYRKREEKRNAGNAVRSAMKSEEQKIKDARRGPLVPFPNQKSEAAEPPKT |
QEENSVTHHEVKCQGKPLAGIYRKREEKRN.GNAVRSAMKS.EQKIKDARRGPLVPFPNQKSEAAEPPKT | |
Retrocopy | QEENSVTHHEVKCQGKPLAGIYRKREEKRNTGNAVRSAMKSKEQKIKDARRGPLVPFPNQKSEAAEPPKT |
Parental | PPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQNRKLTDFYPVRRSSRKSKAELQS |
PPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQN.KLTDFYPVRR.SRK.KAELQS | |
Retrocopy | PPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQNHKLTDFYPVRRRSRKRKAELQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .21 RPM | 26 .44 RPM |
SRP007412_cerebellum | 0 .82 RPM | 19 .68 RPM |
SRP007412_heart | 0 .41 RPM | 20 .31 RPM |
SRP007412_kidney | 0 .31 RPM | 20 .63 RPM |
SRP007412_liver | 0 .75 RPM | 19 .90 RPM |
SRP007412_testis | 0 .00 RPM | 7 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000183955 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013514 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049327 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031093 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005085 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005598 | 1 retrocopy |
retro_ptro_1622 ,
|
Rattus norvegicus | ENSRNOG00000001062 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015376 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015884 | 1 retrocopy |