RetrogeneDB ID: | retro_mmul_2481 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:22861552..22862240(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.13905 | ||
Ensembl ID: | ENSMMUG00000002050 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase IB subunit beta [Source:RefSeq peptide;Acc:NP_001244668] |
Percent Identity: | 85.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELF-SPLHAL |
M.QGDSNPAAIPHA.EDIQGDDR..SQH.R.VLDCKDKEPDV.FVG.SMVQLMQ.YE.WRELF.SPL.A. | |
Retrocopy | MNQGDSNPAAIPHAVEDIQGDDRRISQHDRLVLDCKDKEPDVRFVGGSMVQLMQPYETWRELF>SPLQAP |
Parental | NFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGL |
NFG.GGDTTRHVLWRLKNGEL.NIKPKVIVVWVG.NNHE..AEEVAGG..A.VQLINTRQPQAKIIV..L | |
Retrocopy | NFGTGGDTTRHVLWRLKNGELGNIKPKVIVVWVGRNNHEKEAEEVAGGMVAMVQLINTRQPQAKIIVFDL |
Parental | LPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPL |
LP.GEKPNPLRQKNAKVNQLLK.SL.KL.NVQLLDTD.GFVHS..AISCHDMFDFLHLTGG.Y.K.CKPL | |
Retrocopy | LPQGEKPNPLRQKNAKVNQLLKISLLKLTNVQLLDTDRGFVHSNHAISCHDMFDFLHLTGGSYSKVCKPL |
Parental | HELIMQLLEETPEEKQTTIA |
.ELIMQLLEETPEEKQTTIA | |
Retrocopy | RELIMQLLEETPEEKQTTIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 64 .88 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 50 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 59 .67 RPM |
SRP007412_heart | 0 .00 RPM | 18 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .89 RPM |
SRP007412_liver | 0 .00 RPM | 8 .87 RPM |
SRP007412_testis | 0 .00 RPM | 31 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4661 |
Pan troglodytes | retro_ptro_3097 |
Gorilla gorilla | retro_ggor_2893 |
Pongo abelii | retro_pabe_3621 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008628 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012698 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011274 | 1 retrocopy | |
Felis catus | ENSFCAG00000029945 | 1 retrocopy | |
Homo sapiens | ENSG00000168092 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028197 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies |
retro_mmul_2481 , retro_mmul_892,
|
Macaca mulatta | ENSMMUG00000012172 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007337 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003907 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004318 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018032 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011403 | 1 retrocopy |