RetrogeneDB ID: | retro_mmus_1089 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:33120518..33121096(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082893 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSMUSG00000038845 | ||
Aliases: | Phb, Bap32 | ||
Description: | prohibitin [Source:MGI Symbol;Acc:MGI:97572] |
Percent Identity: | 87.63 % |
Parental protein coverage: | 70.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GSKD-LQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQ |
G.KD.LQNVNITL.ILF.PVASQLP.IYTSI.EDYDE.VL.SITTEILKSVVA.FDAGELITQREL.SRQ | |
Retrocopy | GNKD<LQNVNITLSILFQPVASQLPLIYTSIVEDYDEQVLSSITTEILKSVVAQFDAGELITQRELASRQ |
Parental | VSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSK |
VSDDL.E.AATFGLILDDVSLTHLTFGKEFTEAVEAKQV.QQEAERARF.VEKAEQQKKAAIISAEGDS. | |
Retrocopy | VSDDLIEQAATFGLILDDVSLTHLTFGKEFTEAVEAKQVTQQEAERARFMVEKAEQQKKAAIISAEGDSN |
Parental | AAE-LIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
AAE.LIANSLATAG.GLIEL.KLEAAEDIAYQ.S.S.NITYLP.GQS..LQLPQ | |
Retrocopy | AAELLIANSLATAGNGLIELHKLEAAEDIAYQFSHS*NITYLPVGQSMFLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 19 .89 RPM |
SRP007412_heart | 0 .03 RPM | 63 .66 RPM |
SRP007412_kidney | 0 .04 RPM | 43 .68 RPM |
SRP007412_liver | 0 .00 RPM | 25 .48 RPM |
SRP007412_testis | 0 .59 RPM | 2 .88 RPM |