RetrogeneDB ID:

retro_ogar_968

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873532.1:3462357..3462786(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000027015
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_968
ATGGCTGCCAAAGTGTTTGAGTCCATCGGCAAGTTTGGCCTGGCCTTAGCCATTGCAGGCAGCATGGTGAACTCTGCTTT
GTATAATGTGGATGCTGGACACAGAGCTGTCATCTTTGACCGATTCCATGTTGTGCAGGACACTGTGGTAGGGGAAGGGA
CTCACTTTCTCATCCCATAGGTACAGAAACCAATTATCTTTGACTGCCGCTCTTGACCACGTAACGTGCCAGTCATCACT
GGGAGCAAAGATTTACAGAATGTCAACATCACACTGCGCATCCTCTTCCAGCCTGTAGCCAGCCAGCTTCCTCGAATCTT
CACCAGCATCGGAGAAGACTATCAGGAGCATGCGCTGCCGTCTATTACTACAGAGATCGTCAAGTCGGTGGTGGCTCGCT
TTGATGCTGGAGAGCTAATCACCCAGAGA

ORF - retro_ogar_968 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.91 %
Parental protein coverage: 52.57 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
MAAKVFESIGKFGLALA.AG..VNSALYNVDAGHRAVIFDRF..VQD.VVGEGTHFLIP.VQKPIIFDCR
RetrocopyMAAKVFESIGKFGLALAIAGSMVNSALYNVDAGHRAVIFDRFHVVQDTVVGEGTHFLIP*VQKPIIFDCR
ParentalSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
S.PRNVPVITGSKDLQNVNITLRILF.PVASQLPRIFTSIGEDY.E..LPSITTEI.KSVVARFDAGELI
RetrocopyS*PRNVPVITGSKDLQNVNITLRILFQPVASQLPRIFTSIGEDYQEHALPSITTEIVKSVVARFDAGELI
ParentalTQR
TQR
RetrocopyTQR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_968 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 165 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000047971 retrocopy
Ailuropoda melanoleuca ENSAMEG000000123641 retrocopy
Bos taurus ENSBTAG000000171201 retrocopy
Canis familiaris ENSCAFG000000169261 retrocopy
Choloepus hoffmanni ENSCHOG000000075882 retrocopies
Callithrix jacchus ENSCJAG0000000717422 retrocopies
Erinaceus europaeus ENSEEUG000000064813 retrocopies
Homo sapiens ENSG0000016708515 retrocopies
Gorilla gorilla ENSGGOG0000002800212 retrocopies
Macropus eugenii ENSMEUG000000051221 retrocopy
Microcebus murinus ENSMICG000000069669 retrocopies
Myotis lucifugus ENSMLUG000000082032 retrocopies
Macaca mulatta ENSMMUG0000000015613 retrocopies
Monodelphis domestica ENSMODG000000122101 retrocopy
Mus musculus ENSMUSG000000388458 retrocopies
Nomascus leucogenys ENSNLEG0000000297813 retrocopies
Oryctolagus cuniculus ENSOCUG000000072091 retrocopy
Otolemur garnettii ENSOGAG00000027015 1 retrocopy
retro_ogar_968 ,
Ochotona princeps ENSOPRG000000008682 retrocopies
Procavia capensis ENSPCAG000000088511 retrocopy
Pongo abelii ENSPPYG0000000892016 retrocopies
Pan troglodytes ENSPTRG0000000937614 retrocopies
Rattus norvegicus ENSRNOG0000004679918 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000199292 retrocopies
Tupaia belangeri ENSTBEG000000105374 retrocopies
Tursiops truncatus ENSTTRG000000108361 retrocopy



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