RetrogeneDB ID: | retro_mmus_3657 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:87672991..87673660(-) | ||
Located in intron of: | ENSMUSG00000052372 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084029 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSMUSG00000038845 | ||
Aliases: | Phb, Bap32 | ||
Description: | prohibitin [Source:MGI Symbol;Acc:MGI:97572] |
Percent Identity: | 74.44 % |
Parental protein coverage: | 81.99 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | VGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVL |
VGE.THF.I.WVQKPI.FDC.S...N..VI.G.KDL.NVNITL.ILF..V..QLP.IYT.IG.DY...VL | |
Retrocopy | VGEMTHFPIHWVQKPITFDCHS*TQNIQVIPGIKDLKNVNITLCILFLLVVIQLPHIYTNIGKDYY*LVL |
Parental | PSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVA |
.SI.TE.LK.VVA.FD..ELITQRELV.RQVS..LTE.A.T.G.I.DDVSLTHLTF.KEFTEAVE.KQVA | |
Retrocopy | LSISTEVLKLVVACFDEEELITQRELVFRQVSSSLTE*ASTVGFICDDVSLTHLTFRKEFTEAVEVKQVA |
Parental | QQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITY |
QQE.ERARFVVEKAEQQ.KAAIISAE.D.KAAELIAN.LATAGDGLI.L.KLEAA.DIAYQL..S.NITY | |
Retrocopy | QQEEERARFVVEKAEQQQKAAIISAEDDFKAAELIANMLATAGDGLIDL*KLEAA*DIAYQLYCSLNITY |
Parental | LPAGQSVLLQLPQ |
....Q.VLLQLPQ | |
Retrocopy | QSVEQFVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .16 RPM | 17 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 19 .89 RPM |
SRP007412_heart | 0 .00 RPM | 63 .66 RPM |
SRP007412_kidney | 0 .02 RPM | 43 .68 RPM |
SRP007412_liver | 0 .00 RPM | 25 .48 RPM |
SRP007412_testis | 0 .00 RPM | 2 .88 RPM |