RetrogeneDB ID: | retro_rnor_1542 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:152596209..152597007(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 85.34 % |
Parental protein coverage: | 97.79 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | ESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNV |
ESIGKFGLALAVAGGVVNS.LYNVD.GHR.VIFDRF.G...IVVGEG.HFLIPWVQKPIIFDCRSR.RNV | |
Retrocopy | ESIGKFGLALAVAGGVVNSSLYNVDSGHRVVIFDRFHGI*GIVVGEGIHFLIPWVQKPIIFDCRSRQRNV |
Parental | PVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELV |
.VITGSKDLQ..NITLRILF.PVAS.LPRIYT.IGEDYDE.VLPSITT.ILKS.VARFDAG.L.TQRELV | |
Retrocopy | LVITGSKDLQKDNITLRILFWPVASKLPRIYTTIGEDYDELVLPSITTDILKSLVARFDAG*LFTQRELV |
Parental | SRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEG |
SRQVS.DLT.RAA.FGLILDD.SLTHLTFGKEFTE..EAKQV.QQEAERARF.VEKAEQQKKAAIIS.EG | |
Retrocopy | SRQVSNDLT*RAARFGLILDDRSLTHLTFGKEFTEMAEAKQVTQQEAERARFIVEKAEQQKKAAIISVEG |
Parental | DSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
DSK.AELIANSLAT..DGLIEL.KLEAAEDIAYQ.S.S.NIT.LPAGQSVLL.LP. | |
Retrocopy | DSKVAELIANSLATSSDGLIELLKLEAAEDIAYQFSCSGNITHLPAGQSVLL*LPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |