RetrogeneDB ID: | retro_eeur_369 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_272624:7658..8273(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSEEUG00000006481 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 94.63 % |
Parental protein coverage: | 75.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAAKVFESIGKFGLSLAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAA.VFESIGKFGL.LA.AGGVVNSALYNVDAGH.AVIF.RFRGVQDIVVGEGTHFLIPWVQKPIIFDCR | |
Retrocopy | MAAEVFESIGKFGLVLALAGGVVNSALYNVDAGHKAVIFYRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRPRNV.VITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGEL. | |
Retrocopy | SRPRNVLVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELN |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQ |
TQRELVSRQVSDDLTE..ATFGLILD.VSLTHLT.GKEFTEAVEAKQVAQQEAERARFVVEKAEQ | |
Retrocopy | TQRELVSRQVSDDLTE*VATFGLILDEVSLTHLTSGKEFTEAVEAKQVAQQEAERARFVVEKAEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 26 .11 RPM |
SRP017611_kidney | 0 .94 RPM | 112 .90 RPM |
SRP017611_liver | 0 .32 RPM | 44 .53 RPM |