RetrogeneDB ID: | retro_acar_49 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343756.1:204844..205663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000009398 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSACAG00000004797 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 79.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAKIFETVGKLGLGLAIAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKIF....K.GLGL..AGGVVN.ALYNVDAGHRAVIFDRFRG.QD.VVGEGTHFLIPWVQ.PI.FDCR | |
Retrocopy | MAAKIFDLMSKFGLGLVVAGGVVNWALYNVDAGHRAVIFDRFRGIQDVVVGEGTHFLIPWVQRPIVFDCR |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVTVQLPRIYTTIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRPRN.PV.TGSKDLQNV..TLR.LFRP....LP.IYTT.GEDYDERVLPSI.TE.LKSVVARFDAGELI | |
Retrocopy | SRPRNIPVTTGSKDLQNVDVTLRLLFRPAVLRLPQIYTTLGEDYDERVLPSIATETLKSVVARFDAGELI |
Parental | TQRELVSRQVSEDLTERAATFGLILDDVSLTHLTFGKEFTEAVEMKQVAQQEAERVEKFPSILSQAEQQK |
TQRELVSRQVS.DL.ERA.TFG.ILDDVSLTHLTFGKEF.EAVE.KQVAQQEA...E........AEQQK | |
Retrocopy | TQRELVSRQVSDDLMERAGTFGIILDDVSLTHLTFGKEFLEAVELKQVAQQEA---ERARFEVEKAEQQK |
Parental | KAAIISAEGDSKAAELIANSLASAGDGLIELRKLEAAEDIAYQLSRSRNITYLPSGQSVLLQLPQ |
.A.II.AEGDSKAAELIA..LA.AGDGLIELRKLEAAEDIA.QLSRSRN.TYLPSGQ......PQ | |
Retrocopy | RADIIAAEGDSKAAELIAEALAVAGDGLIELRKLEAAEDIAFQLSRSRNVTYLPSGQAEFIRPPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .46 RPM | 35 .15 RPM |
SRP009831_brain | 0 .00 RPM | 43 .13 RPM |
SRP009831_dewlap | 0 .00 RPM | 89 .56 RPM |
SRP009831_embryo | 0 .03 RPM | 110 .85 RPM |
SRP009831_heart | 0 .47 RPM | 72 .95 RPM |
SRP009831_liver | 0 .00 RPM | 64 .87 RPM |
SRP009831_lung | 0 .00 RPM | 23 .83 RPM |
SRP009831_ovary | 0 .00 RPM | 95 .40 RPM |
SRP009831_skeletal_muscle | 0 .04 RPM | 70 .33 RPM |