RetrogeneDB ID: | retro_rnor_898 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:938773..939523(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 88. % |
Parental protein coverage: | 91.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | SALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRI |
SALYN.DAGHR.VIFDRF.GVQDIVVGEGTHFLIP.VQKPIIFDCR..PRNV.VITGSKDLQNVN.TL.I | |
Retrocopy | SALYNMDAGHRSVIFDRFCGVQDIVVGEGTHFLIPRVQKPIIFDCRP*PRNVQVITGSKDLQNVNVTLCI |
Parental | LFR--PVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFG |
LF...P...QLPRIYTSIGEDYDERVLPSITT.ILKSVVARF.AGELITQRELVSRQVSDDLTE.AATFG | |
Retrocopy | LFWLWPASFQLPRIYTSIGEDYDERVLPSITTKILKSVVARFGAGELITQRELVSRQVSDDLTE*AATFG |
Parental | LILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAG |
LILDD.SLTHLTF.KEFTEAVEAKQVAQQEAE.ARFV.EKAEQQ.KAAIISA.GDSKAAELIANSLATAG | |
Retrocopy | LILDDASLTHLTFRKEFTEAVEAKQVAQQEAEGARFVEEKAEQQNKAAIISADGDSKAAELIANSLATAG |
Parental | DGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
DGLIELRKLEA.EDIAYQLS.SRNIT.LPAGQ.VLL..PQ | |
Retrocopy | DGLIELRKLEASEDIAYQLSCSRNIT*LPAGQFVLL*FPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |