RetrogeneDB ID: | retro_cfam_202 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:109554492..109555311(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000004349 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSCAFG00000016926 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MA.KVFESI.KFGLALAVAGGVVNSALYNVDAGHRAVIFD.FRGVQDIVVGEGTHFLIPWVQK.IIFDC. | |
Retrocopy | MATKVFESIDKFGLALAVAGGVVNSALYNVDAGHRAVIFDWFRGVQDIVVGEGTHFLIPWVQKSIIFDCH |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRPRNVPVITGSKDLQNVNI.LRILF.PV.SQLP.IFTSIGEDYDERVLPSITTEILKSVVA.FDAGELI | |
Retrocopy | SRPRNVPVITGSKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLPSITTEILKSVVAHFDAGELI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA |
TQRELVSRQVSDDL.E.AATFGLILDDVSLTHLTFGKEFT.AVEAK.VAQQEAERARFVVEKAEQQKK.A | |
Retrocopy | TQRELVSRQVSDDLIEQAATFGLILDDVSLTHLTFGKEFTKAVEAKLVAQQEAERARFVVEKAEQQKKEA |
Parental | IISA-GDSKAAELMTNSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
IISA.G.SKAAEL..NSLAT.GDGLIELRKLEAAED.AYQLSRSRNITYLPAGQSVLLQLPQ | |
Retrocopy | IISAEGFSKAAELIANSLATGGDGLIELRKLEAAEDMAYQLSRSRNITYLPAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 30 .32 RPM |
SRP017611_brain | 0 .08 RPM | 15 .40 RPM |
SRP017611_kidney | 0 .86 RPM | 148 .91 RPM |
SRP017611_liver | 0 .29 RPM | 42 .49 RPM |