RetrogeneDB ID: | retro_mmus_3535 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:146933536..146934229(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084061 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSMUSG00000038845 | ||
Aliases: | Phb, Bap32 | ||
Description: | prohibitin [Source:MGI Symbol;Acc:MGI:97572] |
Percent Identity: | 79.91 % |
Parental protein coverage: | 86.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQ |
G....IFD.F.GVQDI..GEGTHFLIPWVQKPIIFDC.SRP....V.TGSK.LQNVNIT.RILF..VAS. | |
Retrocopy | GELCIIFDSFHGVQDIMLGEGTHFLIPWVQKPIIFDCCSRPQSILVVTGSKELQNVNITVRILFWLVASH |
Parental | LPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTH |
LP.IYT.IGEDYDERVLPSITTEI.KSVV..FDAGEL.T.RELVSRQV.DDLTERAATFGLILDD..LTH | |
Retrocopy | LPHIYTNIGEDYDERVLPSITTEIFKSVVSQFDAGELVTKRELVSRQVCDDLTERAATFGLILDDIYLTH |
Parental | LTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLE |
LTF.KEFTE...AKQVAQQEAERARF.VEKAEQQ.KAAIISAEGDSK.AELI.NSLATAG.GLIELRKLE | |
Retrocopy | LTFRKEFTETIKAKQVAQQEAERARFLVEKAEQQQKAAIISAEGDSKEAELIVNSLATAGAGLIELRKLE |
Parental | AAEDIAYQLSRSRNITYLPAGQSV |
AAEDIAYQLS.S.....LPA...V | |
Retrocopy | AAEDIAYQLSCSH---HLPATRAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .89 RPM |
SRP007412_heart | 0 .00 RPM | 63 .66 RPM |
SRP007412_kidney | 0 .02 RPM | 43 .68 RPM |
SRP007412_liver | 0 .00 RPM | 25 .48 RPM |
SRP007412_testis | 0 .14 RPM | 2 .88 RPM |