RetrogeneDB ID: | retro_mputfur_496 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896915.1:13577940..13578360(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPN1 | ||
Ensembl ID: | ENSMPUG00000006775 | ||
Aliases: | None | ||
Description: | poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSV |
M.E..EKLKELQNEVEKQMNMSPPP.N.GPVIMS.EEKMEADA.SI.VG..DY.ATAE..EA..HGCGS. | |
Retrocopy | MGEQSEKLKELQNEVEKQMNMSPPPHNVGPVIMSSEEKMEADACSICVGKADYDATAEGPEALVHGCGSI |
Parental | NRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRA |
N..T.LCD..SGH.KGFAYIEFSDKESVRTSLALDE.LFR.RQI.VIPKRTN.P......R......Y.. | |
Retrocopy | NCLTLLCDRSSGHSKGFAYIEFSDKESVRTSLALDEFLFRRRQIRVIPKRTNGPEFPMSPRPCSTTNYNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006884 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007960 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000002873 | 1 retrocopy | |
Homo sapiens | ENSG00000100836 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022683 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006775 | 1 retrocopy |
retro_mputfur_496 ,
|
Mus musculus | ENSMUSG00000022194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015009 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008710 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005663 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006168 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002023 | 1 retrocopy |