RetrogeneDB ID: | retro_pabe_1645 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:54386796..54387391(+) | ||
Located in intron of: | ENSPPYG00000010341 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPN1 | ||
Ensembl ID: | ENSPPYG00000005663 | ||
Aliases: | None | ||
Description: | poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565] |
Percent Identity: | 83.25 % |
Parental protein coverage: | 71.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AAAAATGAARRR-GETGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAP-PGAPGPGP |
A.AAA...AR.R.GE.GE.APGGAGD.GNGLESEELEPEELLL....EPEPEEEP..PRA..PGAPGP.P | |
Retrocopy | AGAAAPSCARGR>GEAGEVAPGGAGDDGNGLESEELEPEELLL----EPEPEEEPLQPRAACPGAPGPRP |
Parental | GSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGP |
.SGA.GSQEE.EEPGLVEGDPGDGAIEDP..EAIKA.VREMEEEAEKLKELQN.VEKQMNMSPPPG..GP | |
Retrocopy | PSGATGSQEEGEEPGLVEGDPGDGAIEDPVPEAIKAGVREMEEEAEKLKELQNDVEKQMNMSPPPGDVGP |
Parental | VIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFS |
VI.SIEEKMEADARSI..GNVDYGATAEELEAHFHGCGSVN.VTILCDKFSGH.K.FAYIE.S | |
Retrocopy | VITSIEEKMEADARSIGAGNVDYGATAEELEAHFHGCGSVNHVTILCDKFSGHSKRFAYIESS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 39 .04 RPM |
SRP007412_cerebellum | 0 .24 RPM | 62 .87 RPM |
SRP007412_heart | 0 .00 RPM | 11 .71 RPM |
SRP007412_kidney | 0 .13 RPM | 48 .23 RPM |
SRP007412_liver | 0 .12 RPM | 23 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006884 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007960 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000002873 | 1 retrocopy | |
Homo sapiens | ENSG00000100836 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022683 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006775 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015009 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008710 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005663 | 2 retrocopies |
retro_pabe_1645 , retro_pabe_3773,
|
Pan troglodytes | ENSPTRG00000006168 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002023 | 1 retrocopy |