RetrogeneDB ID: | retro_btau_693 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:24855853..24856535(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.63774 | ||
Ensembl ID: | ENSBTAG00000006884 | ||
Aliases: | None | ||
Description: | Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q28165] |
Percent Identity: | 94.74 % |
Parental protein coverage: | 73.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PGAPGPGPGSGAPGNQEEEEE-SGLVEGDPG-DGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMN |
PGAPGPGPGSGAPGN.......SGLVEGDPG.DGAI.DPELEAIKARVREMEEEAEKLKELQNEVEKQMN | |
Retrocopy | PGAPGPGPGSGAPGNXXXXXXXSGLVEGDPG>DGAI*DPELEAIKARVREMEEEAEKLKELQNEVEKQMN |
Parental | MSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI |
MSPPPGNAGPVIMSIEEK.EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI | |
Retrocopy | MSPPPGNAGPVIMSIEEKIEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYI |
Parental | EFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRP |
EFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPR.RYRARTTNYNS.RSRFYSGFNSRP | |
Retrocopy | EFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRTRYRARTTNYNSTRSRFYSGFNSRP |
Parental | RGRVYRGRARATSWYSPY |
RGRVYRGRARATSWYSPY | |
Retrocopy | RGRVYRGRARATSWYSPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 80 .10 RPM |
ERP005899_muscle | 0 .26 RPM | 63 .93 RPM |
SRP017611_brain | 0 .50 RPM | 161 .61 RPM |
SRP017611_kidney | 0 .24 RPM | 112 .79 RPM |
SRP017611_liver | 0 .08 RPM | 37 .23 RPM |
SRP030211_testis | 1 .00 RPM | 217 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006884 | 1 retrocopy |
retro_btau_693 ,
|
Bos taurus | ENSBTAG00000023752 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007960 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000002873 | 1 retrocopy | |
Homo sapiens | ENSG00000100836 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022683 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006775 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015009 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008710 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005663 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006168 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002023 | 1 retrocopy |