Parental gene:

PABPN1, ENSPPYG00000005663

Aliases:None
Description:poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565]
Organism:Orangutan (Pongo abelii)
Coordinates:14:22805694..22808778(+)


>ENSPPYG00000005663
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAACGGGGGCTGCGAGGCGTCGGGGCGAGACCGGGGAGGGGGCCCCGGGGGG
CGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGGAACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCG
AGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCCCCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGC
CAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGGTGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTAT
CAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCCGAGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATA
TGAGTCCACCTCCAGGCAATGCTGGCCCAGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTAT
GTTGGCAATGTGGACTATGGTGCAACAGCGGAAGAGCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTAC
CATACTCTGTGACAAATTTAGTGGCCATCCCAAAGGGTTTGCATATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTT
CCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGGCAAATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGC
ACAACAGACCGGGGTTTTCCACGAGCCCGCTACCGCGCCCGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAG
TGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACAGGTCAGGATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .04 RPM
SRP007412_cerebellum 62 .87 RPM
SRP007412_heart 11 .71 RPM
SRP007412_kidney 48 .23 RPM
SRP007412_liver 23 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006884 ortholog_one2one 1 retrogene
retro_btau_693,
Callithrix jacchus ENSCJAG00000007960 ortholog_one2one 4 retrogenes
retro_cjac_1263, retro_cjac_2291, retro_cjac_3278, retro_cjac_3836,
Dipodomys ordii ENSDORG00000002873 ortholog_one2one 1 retrogene
retro_dord_606,
Homo sapiens ENSG00000100836 ortholog_one2one 1 retrogene
retro_hsap_4855,
Gorilla gorilla ENSGGOG00000022683 ortholog_one2one 2 retrogenes
retro_ggor_1454, retro_ggor_3030,
Mustela putorius furo ENSMPUG00000006775 ortholog_one2one 1 retrogene
retro_mputfur_496,
Mus musculus ENSMUSG00000022194 possible_ortholog 1 retrogene
retro_mmus_403,
Nomascus leucogenys ENSNLEG00000015009 ortholog_one2one 2 retrogenes
retro_nleu_2066, retro_nleu_3023,
Otolemur garnettii ENSOGAG00000008710 ortholog_one2one 1 retrogene
retro_ogar_797,
Pan troglodytes ENSPTRG00000006168 ortholog_one2one 2 retrogenes
retro_ptro_1339, retro_ptro_3232,
Sus scrofa ENSSSCG00000002023 ortholog_one2one 1 retrogene
retro_sscr_625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1645 83.25 71.53
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2. retro_pabe_3773 80.11 63.70
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Download FASTA sequences of all ENSPPYG00000005663 retrocopies