Parental gene:

PABPN1, ENSSSCG00000002023

Aliases:None
Description:poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565]
Organism:Pig (Sus scrofa)
Coordinates:7:80984359..80988312(+)


>ENSSSCG00000002023
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCTTGGAGTCTGAGG
AGCTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCAGGAGCTCCGGGCCCTGGGCCTGGCTCGGGAGCCCCCGGCAGCCAGGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCGATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAGCTACAGAACGAAGTAGAGAAGCAGATGAATATGAGTCCACCACCAGGCAATGCTGGCCCAGTTATC
ATGTCCATTGAGGAGAAGATGGAGGCAGATGCCCGATCTATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCACACTTTCATGGCTGTGGTTCAGTCAACCGCGTTACTATACTCTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCATATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGA
CAAATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCTCGATACCG
TGCCCGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGTGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 33 .05 RPM
SRP014902_testis 161 .96 RPM
SRP018856_adipose 85 .98 RPM
SRP018288_kidney 149 .73 RPM
SRP018288_lung 91 .75 RPM
SRP018288_liver 89 .07 RPM
SRP018288_heart 51 .16 RPM
SRP035408_liver 122 .50 RPM
SRP035408_brain 249 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006884 ortholog_one2one 1 retrogene
retro_btau_693,
Callithrix jacchus ENSCJAG00000007960 ortholog_one2one 4 retrogenes
retro_cjac_1263, retro_cjac_2291, retro_cjac_3278, retro_cjac_3836,
Dipodomys ordii ENSDORG00000002873 ortholog_one2one 1 retrogene
retro_dord_606,
Homo sapiens ENSG00000100836 ortholog_one2one 1 retrogene
retro_hsap_4855,
Gorilla gorilla ENSGGOG00000022683 ortholog_one2one 2 retrogenes
retro_ggor_1454, retro_ggor_3030,
Mustela putorius furo ENSMPUG00000006775 ortholog_one2one 1 retrogene
retro_mputfur_496,
Mus musculus ENSMUSG00000022194 possible_ortholog 1 retrogene
retro_mmus_403,
Nomascus leucogenys ENSNLEG00000015009 ortholog_one2one 2 retrogenes
retro_nleu_2066, retro_nleu_3023,
Otolemur garnettii ENSOGAG00000008710 ortholog_one2one 1 retrogene
retro_ogar_797,
Pongo abelii ENSPPYG00000005663 ortholog_one2one 2 retrogenes
retro_pabe_1645, retro_pabe_3773,
Pan troglodytes ENSPTRG00000006168 ortholog_one2one 2 retrogenes
retro_ptro_1339, retro_ptro_3232,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_625 74.06 86.27
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Download FASTA sequences of all ENSSSCG00000002023 retrocopies