RetrogeneDB ID: | retro_pabe_3773 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:68922884..68923410(-) | ||
Located in intron of: | ENSPPYG00000020453 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPN1 | ||
Ensembl ID: | ENSPPYG00000005663 | ||
Aliases: | None | ||
Description: | poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565] |
Percent Identity: | 80.11 % |
Parental protein coverage: | 63.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPG-PGSGAPGSQEEEEEPGLVEGDPGDGAI |
YGNG............L.PEPEPEPEEEPP.P.AP.....PG.PGSGAPGSQEEEEEPGLVEGDP.D.AI | |
Retrocopy | YGNGXXXXXXXXXXXPLDPEPEPEPEEEPPWPCAPTPTGAPG<PGSGAPGSQEEEEEPGLVEGDPEDSAI |
Parental | EDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMS-IEEKMEADARSIYVGNVDYGA |
EDPELEAIKARVREMEEEAEKLKELQ.EVEKQ.NMSP.PGNAGPVI.S.IEEKMEADARSIYV...DYGA | |
Retrocopy | EDPELEAIKARVREMEEEAEKLKELQKEVEKQTNMSPLPGNAGPVITS<IEEKMEADARSIYV---DYGA |
Parental | TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE |
TAEELEAHFHGCGSVNRV.ILCDKFSGHPK.FAYIEFS... | |
Retrocopy | TAEELEAHFHGCGSVNRVIILCDKFSGHPKRFAYIEFSKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 39 .04 RPM |
SRP007412_cerebellum | 0 .24 RPM | 62 .87 RPM |
SRP007412_heart | 0 .15 RPM | 11 .71 RPM |
SRP007412_kidney | 0 .23 RPM | 48 .23 RPM |
SRP007412_liver | 0 .24 RPM | 23 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006884 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007960 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000002873 | 1 retrocopy | |
Homo sapiens | ENSG00000100836 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022683 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006775 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015009 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008710 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005663 | 2 retrocopies |
retro_pabe_1645, retro_pabe_3773 ,
|
Pan troglodytes | ENSPTRG00000006168 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002023 | 1 retrocopy |