RetrogeneDB ID: | retro_mputfur_625 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896927.1:1208491..1209217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | G3BP1 | ||
Ensembl ID: | ENSMPUG00000013661 | ||
Aliases: | None | ||
Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292] |
Percent Identity: | 67.58 % |
Parental protein coverage: | 54.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF |
.V.EKPSPL.VG.E.VR.YYT.LNQAPDM..RFYGKNSSYV.GGLDSNGK.ADAVYGQKEIH.K.MSQNF | |
Retrocopy | IVIEKPSPLWVGQELVRKYYTSLNQAPDMPRRFYGKNSSYVRGGLDSNGKSADAVYGQKEIHKKMMSQNF |
Parental | TNCHTKIRHVDAHA-TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFG |
.NCHTK......HA...NDGV..QVMGLLSNNNQ..RRFM.TF.L.P.GSVANKFY.H..I.RYQDEVF. | |
Retrocopy | PNCHTK--RCNPHA>SQNDGV--QVMGLLSNNNQLFRRFMKTFALGPKGSVANKFYIH--ISRYQDEVFD |
Parental | GFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEQEQEPVSEI |
GFVTEPQ...................V.DDSGTFYDQTVSND....LEE...EP...PEPEQE..P..EI | |
Retrocopy | GFVTEPQXXXXXXXXXXXXXXXXXXXVLDDSGTFYDQTVSND----LEEHLEEPVAEPEPEQE--PIFEI |
Parental | QEE-KSEPALEETAPEDVQKSSSPAPTDITQTVQEDLRTFSWASVT |
Q.E.KSEP.LEET.PED.QKSSSP.P..I.QT.QE.LRTFSW..VT | |
Retrocopy | QQE<KSEPVLEETTPEDTQKSSSPTPMNIDQTIQENLRTFSWELVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006626 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018758 | 3 retrocopies | |
Homo sapiens | ENSG00000145907 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013661 | 1 retrocopy |
retro_mputfur_625 ,
|
Oryctolagus cuniculus | ENSOCUG00000022143 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001726 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015968 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017438 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017250 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013186 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004570 | 1 retrocopy |