RetrogeneDB ID: | retro_tsyr_1391 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_423995:497..1252(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | G3BP1 | ||
Ensembl ID: | ENSTSYG00000004570 | ||
Aliases: | None | ||
Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 55.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QQTPEVVPDDSGTFYDQTVVSNDMEEHLEEPVAEPEPEPEPEPEQEPVSEIQEEKSEPVLEETAPEDAQK |
QQTPEVVPDDSGTFYDQTVVSNDMEEHL.EPVAEP.PEPEPEPEQEPVSEIQEEKSEPVLEET.PEDAQK | |
Retrocopy | QQTPEVVPDDSGTFYDQTVVSNDMEEHLKEPVAEPGPEPEPEPEQEPVSEIQEEKSEPVLEETSPEDAQK |
Parental | SSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRQESKPESQIPPQRPQR |
SSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGA..VTGIPPHVVKVPASQPRQESKPESQIP...PQR | |
Retrocopy | SSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGALLVTGIPPHVVKVPASQPRQESKPESQIP---PQR |
Parental | DQRVREQRINIPPQRGPRPIRESGEQGDVEPR-RIVRHPDSHQLFIGNLPHEVDKAELKDFFQNYGNVVE |
.QR...QR........P.P.R.....G.VEP..RIVRH.D.HQLFIG.LP.EV.....KDF.Q.YGNV.E | |
Retrocopy | PQR--DQRVQEQRINIP-PQRGPRREGNVEPK<RIVRHLDNHQLFIGDLPQEVGTSKFKDFSQFYGNVLE |
Parental | LRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAA |
LRINS...LPNFGFVVFDDSE.V.KVL..RPI.FRGEV.L.VEE..T.AA | |
Retrocopy | LRINS-EELPNFGFVVFDDSESVLKVLGKRPIIFRGEVGLKVEEQTT*AA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006626 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018758 | 3 retrocopies | |
Homo sapiens | ENSG00000145907 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013661 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022143 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001726 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015968 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017438 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017250 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000013186 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004570 | 1 retrocopy |
retro_tsyr_1391 ,
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