RetrogeneDB ID:

retro_pvam_1188

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_38803:212..1118(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:G3BP1
Ensembl ID:ENSPVAG00000017250
Aliases:None
Description:GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]


Retrocopy-Parental alignment summary:






>retro_pvam_1188
CACACTAAGATTCGCCATGTTGTTGCTCATACCACTCTGAATGATGGTGTGCTGGTCTAAGTGATGGAGTTGCTCCCTCA
TAACAACCAGACTTTAAGGAGATTCATGCAGACATTTGTCCTTGCTCCTGAGGGCTCTGTTGCAAATAAGTTCTACTTTC
ACAATGACATCTTCAGATACCAAGATGAGGTCTTTGGTGGCTCTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTA
GAGGAACCTGAAGAAAGACAACAGATATTTGAGATGGCACTTGATGATTCTGGAACTTTTATGATCAGACTATCAGCAAT
GACTTGAAAGAACATTTAGAGGAAATTGTTGCTGAACCAGAGCCTGGTCCTGAACCAGAACTGGAGCAAGAACCTGTATC
TGAAATCCAACATAAGTCTGAGCCAGTTTTAGAAGAAATTTCTCCTAAGGATGTTCAGAAGTATTCTTCTCTCAGCACCT
ATAGACACAGCTTGGACAGTGCAGGAAGACTTGAGGACATTTTCCTGGGCATCTGTAACTAGTAAGAACCTTCCACCCAC
TGCAGCTCTTCCAGTTACTGGGATACCACCTCATGTTGTTAAAGTACCAGCTTCACAGCCTCGCCAGAAGTCTAACCCTG
AATCTCAGATTCCACCACAGAGGCATCAGAGGAATCAAAGAGTGTGAGAACAACAAATAAATATTCCTCCCCAGAGGGGA
CATAGACCAATCTGTGAGGCTGGTGAGCAAGGTGATGTTGAATCCTCCAAAATTGTGAGACACCCTGATAGTCACCAACT
CTTCAATGGCAATCTGCCTCATGAGGTGGACGAATCAGAGCTTAAAGATTTCTTTCAAAAATGTGGGAATGTGGTTGAAC
TACACATTGACAATGGTGGGAAATTG

ORF - retro_pvam_1188 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.34 %
Parental protein coverage: 64.47 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalHVDAHATLNDATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVT
H..........TLNDGV.V.VM.LL..NNQ.LRRFMQTFVLAPEGSVANKFY.HNDIFRYQDEVFGG.VT
RetrocopyHTKIRHVVAHTTLNDGVLV*VMELLPHNNQTLRRFMQTFVLAPEGSVANKFYFHNDIFRYQDEVFGGSVT
ParentalEPQEESEEEVEEPEERQQTPEVVPDDSGTF-YDQTVSNDLEEHLEEPVAEPEPDPEPESEQEPVSEIQEE
EPQEESEEEVEEPEERQQ..E...DDSGTF.YDQT.SNDL.EHLEE.VAEPEP.PEPE.EQEPVSEIQ..
RetrocopyEPQEESEEEVEEPEERQQIFEMALDDSGTF<YDQTISNDLKEHLEEIVAEPEPGPEPELEQEPVSEIQH-
ParentalKSEPVLEETAPEDAQKSSS-PAPTDIAQTAQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQP
KSEPVLEE..P.D.QK.SS..AP.D.A.T.QEDLRTFSWASVTSKNLPP..A.PVTGIPPHVVKVPASQP
RetrocopyKSEPVLEEISPKDVQKYSS>SAPIDTAWTVQEDLRTFSWASVTSKNLPPTAALPVTGIPPHVVKVPASQP
ParentalRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVD
R..S.PESQIPPQR.QR.QRV.EQ.INIPPQRG.RPI.EAGEQGDVE...IVRHPDSHQLF.GNLPHEVD
RetrocopyRQKSNPESQIPPQRHQRNQRV*EQQINIPPQRGHRPICEAGEQGDVESSKIVRHPDSHQLFNGNLPHEVD
ParentalKSELKDFFQKYGNVVELRINSGGKL
.SELKDFFQK.GNVVEL.I..GGKL
RetrocopyESELKDFFQKCGNVVELHIDNGGKL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1188 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000066262 retrocopies
Dasypus novemcinctus ENSDNOG000000187583 retrocopies
Homo sapiens ENSG000001459071 retrocopy
Microcebus murinus ENSMICG000000122352 retrocopies
Mustela putorius furoENSMPUG000000136611 retrocopy
Oryctolagus cuniculus ENSOCUG000000221431 retrocopy
Otolemur garnettii ENSOGAG000000017262 retrocopies
Pongo abelii ENSPPYG000000159681 retrocopy
Pan troglodytes ENSPTRG000000174381 retrocopy
Pteropus vampyrus ENSPVAG00000017250 2 retrocopies
retro_pvam_1188 , retro_pvam_188,
Rattus norvegicus ENSRNOG000000131861 retrocopy
Tarsius syrichta ENSTSYG000000045701 retrocopy



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