Parental gene:

G3BP1, ENSPTRG00000017438

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:152639335..152672755(+)


>ENSPTRG00000017438
ATGGTGATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAATTTGTGAGACAGTATTACACACTGCTGAACCAGGCCCC
AGACATGCTGCATAGATTTTATGGAAAGAACTCTTCTTATGTCCATGGGGGATTGGATTCAAATGGAAAGCCAGCAGATG
CAGTCTACGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATTCGCCATGTT
GATGCTCATGCCACGCTAAATGATGGTGTGGTAGTCCAGGTGATGGGGCTTCTCTCTAACAACAACCAGGCTTTGAGGAG
ATTCATGCAAACGTTTGTCCTTGCTCCTGAGGGGTCTGTTGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACC
AAGATGAGGTCTTTGGTGGGTTTGTCACTGAGCCTCAGGAGGAGTCTGAAGAAGAAGTAGAGGAACCTGAAGAAAGACAG
CAAACACCTGAGGTGGTACCTGATGATTCTGGAACTTTCTATGATCAGGCAGTTGTCAGTAATGACGTGGAAGAACATTT
AGAGGAGCCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAACAAGAACCTGTATCTGAAATCCAAGAGGAAA
AGCCTGAGCCAGTATTAGAAGAAACTGCCCCTGAGGATGCTCAGAAGAGTTCTTCTCCAGCACCTGCAGACATAGCTCAG
ACAGTACAGGAAGACTTGAGGACATTTTCTTGGGCATCTGTGACCAGTAAGAATCTTCCACCCAGTGGAGCTGTTCCAGT
TACTGGGATACCACCTCATGTTGTTAAAGTACCAGCTTCACAGCCCCGTCCAGAGTCTAAGCCTGAATCTCAGATTCCAC
CACAGAGACCTCAACGGGATCAAAGAGTGCGAGAACAACGAATAAATATTCCTCCCCAAAGGGGACCCAGACCAATCCGT
GAGGCTGGTGAGCAAGGTGACATTGAACCCCGAAGAATGGTGAGACACCCTGACAGTCACCAACTCTTCATTGGCAACCT
GCCTCATGAAGTGGACAAATCAGAGCTTAAAGATTTCTTTCAAAGTTATGGAAACGTGGTGGAGTTGCGCATTAACAGTG
GTGGGAAATTACCCAATTTTGGTTTTGTTGTGTTTGATGATTCTGAGCCTGTTCAGAAAGTCCTTAGCAACAGGCCCATC
ATGTTCAGAGGTGAGGTCCGTCTGAATGTCGAAGAGAAGAAGACTCGAGCTGCCAGGGAAGGCGACCGACGAGATAATCG
CCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCCCGTGGAGGCATGGTGCAGAAAC
CAGGATTTGGAGTGGGAAGGGGGCTTGCGCCACGGCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 23 .58 RPM
SRP007412_cerebellum 31 .33 RPM
SRP007412_heart 53 .51 RPM
SRP007412_kidney 59 .13 RPM
SRP007412_liver 52 .31 RPM
SRP007412_testis 108 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006626 possible_ortholog 2 retrogenes
retro_cpor_1119, retro_cpor_464,
Dasypus novemcinctus ENSDNOG00000018758 ortholog_one2one 3 retrogenes
retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Homo sapiens ENSG00000145907 ortholog_one2one 1 retrogene
retro_hsap_2322,
Microcebus murinus ENSMICG00000012235 ortholog_one2one 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 ortholog_one2one 1 retrogene
retro_mputfur_625,
Oryctolagus cuniculus ENSOCUG00000022143 possible_ortholog 1 retrogene
retro_ocun_1352,
Otolemur garnettii ENSOGAG00000001726 ortholog_one2one 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 ortholog_one2one 1 retrogene
retro_pabe_2104,
Pteropus vampyrus ENSPVAG00000017250 ortholog_one2one 2 retrogenes
retro_pvam_1188, retro_pvam_188,
Rattus norvegicus ENSRNOG00000013186 possible_ortholog 1 retrogene
retro_rnor_1282,
Tarsius syrichta ENSTSYG00000004570 ortholog_one2one 1 retrogene
retro_tsyr_1391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1696 86.75 100.00
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Download FASTA sequences of all ENSPTRG00000017438 retrocopies