Parental gene:

G3BP1, ENSG00000145907

Aliases:G3BP1, G3BP, HDH-VIII
Description:GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]
Organism:Human (Homo sapiens)
Coordinates:5:151150605..151192346(+)


>ENSG00000145907
ATGGTGATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAATTTGTGAGACAGTATTACACACTGCTGAACCAGGCCCC
AGACATGCTGCATAGATTTTATGGAAAGAACTCTTCTTATGTCCATGGGGGATTGGATTCAAATGGAAAGCCAGCAGATG
CAGTCTACGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATTCGCCATGTT
GATGCTCATGCCACGCTAAATGATGGTGTGGTAGTCCAGGTGATGGGGCTTCTCTCTAACAACAACCAGGCTTTGAGGAG
ATTCATGCAAACGTTTGTCCTTGCTCCTGAGGGGTCTGTTGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACC
AAGATGAGGTCTTTGGTGGGTTTGTCACTGAGCCTCAGGAGGAGTCTGAAGAAGAAGTAGAGGAACCTGAAGAAAGACAG
CAAACACCTGAGGTGGTACCTGATGATTCTGGAACTTTCTATGATCAGGCAGTTGTCAGTAATGACATGGAAGAACATTT
AGAGGAGCCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAACAAGAACCTGTATCTGAAATCCAAGAGGAAA
AGCCTGAGCCAGTATTAGAAGAAACTGCCCCTGAGGATGCTCAGAAGAGTTCTTCTCCAGCACCTGCAGACATAGCTCAG
ACAGTACAGGAAGACTTGAGGACATTTTCTTGGGCATCTGTGACCAGTAAGAATCTTCCACCCAGTGGAGCTGTTCCAGT
TACTGGGATACCACCTCATGTTGTTAAAGTACCAGCTTCACAGCCCCGTCCAGAGTCTAAGCCTGAATCTCAGATTCCAC
CACAAAGACCTCAGCGGGATCAAAGAGTGCGAGAACAACGAATAAATATTCCTCCCCAAAGGGGACCCAGACCAATCCGT
GAGGCTGGTGAGCAAGGTGACATTGAACCCCGAAGAATGGTGAGACACCCTGACAGTCACCAACTCTTCATTGGCAACCT
GCCTCATGAAGTGGACAAATCAGAGCTTAAAGATTTCTTTCAAAGTTATGGAAACGTGGTGGAGTTGCGCATTAACAGTG
GTGGGAAATTACCCAATTTTGGTTTTGTTGTGTTTGATGATTCTGAGCCTGTTCAGAAAGTCCTTAGCAACAGGCCCATC
ATGTTCAGAGGTGAGGTCCGTCTGAATGTCGAAGAGAAGAAGACTCGAGCTGCCAGGGAAGGCGACCGACGAGATAATCG
CCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCCCGTGGAGGCATGGTGCAGAAAC
CAGGATTTGGAGTGGGAAGGGGGCTTGCGCCACGGCAGTGA

Library Parental gene expression (RPM)
bodymap2_liver 126 .40 RPM
bodymap2_lung 233 .02 RPM
bodymap2_breast 221 .17 RPM
bodymap2_adipose 239 .73 RPM
bodymap2_adrenal 208 .71 RPM
bodymap2_skeletal_muscle 221 .55 RPM
bodymap2_thyroid 197 .86 RPM
bodymap2_prostate 131 .53 RPM
bodymap2_colon 170 .95 RPM
bodymap2_testis 243 .49 RPM
bodymap2_brain 115 .86 RPM
bodymap2_heart 116 .03 RPM
bodymap2_white_blood_cells 262 .91 RPM
bodymap2_lymph_node 206 .53 RPM
bodymap2_ovary 289 .58 RPM
bodymap2_kidney 186 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006626 possible_ortholog 2 retrogenes
retro_cpor_1119, retro_cpor_464,
Dasypus novemcinctus ENSDNOG00000018758 ortholog_one2one 3 retrogenes
retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Microcebus murinus ENSMICG00000012235 ortholog_one2one 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 ortholog_one2one 1 retrogene
retro_mputfur_625,
Oryctolagus cuniculus ENSOCUG00000022143 possible_ortholog 1 retrogene
retro_ocun_1352,
Otolemur garnettii ENSOGAG00000001726 ortholog_one2one 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 ortholog_one2one 1 retrogene
retro_pabe_2104,
Pan troglodytes ENSPTRG00000017438 ortholog_one2one 1 retrogene
retro_ptro_1696,
Pteropus vampyrus ENSPVAG00000017250 ortholog_one2one 2 retrogenes
retro_pvam_1188, retro_pvam_188,
Rattus norvegicus ENSRNOG00000013186 possible_ortholog 1 retrogene
retro_rnor_1282,
Tarsius syrichta ENSTSYG00000004570 ortholog_one2one 1 retrogene
retro_tsyr_1391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2322 87.61 100.00
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Download FASTA sequences of all ENSG00000145907 retrocopies