Parental gene: | G3BP1, ENSDNOG00000018758 |
| Aliases: | None |
| Description: | GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_3984:15337..64530(+) |
>ENSDNOG00000018758
TTTTATGGAAAAAACTCTTCTTATGTCCATGGGGGATTGGATTCAAATGGAAAACCAGCAGATGCGGTCTATGGACAGAA
AGAAATCCATAGGAAAGTGATGTCACAGAACTTTACCAACTGCCATACTAAGATTCGCCATGTTGATGCTCATGCCACTC
TAAATGATGGTGTGGTGGTACAGGTGATGGGACTGCTGTCTAATAACAACCAGGCTTTGAGGAGATTCATGCAGACTTTT
GTCCTTGCTCCTGAGGGCTCTGTGGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACCAAGATGAGGTCTTTGG
TGGCTTTGTCACTGAGCCTCAAGAGGAGTCTGAGGAAGAAGTAGAGGAACCTGAGGAAAGACAGCAAACACCAGAGGTGG
TACCCGAGGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAAGAACATTTAGAGGAACCTGTTGCTGAG
CCAGAGCCCGATCCTGAACCAGAACCGGAGCAAGAACCTGTATCTGAAATCCAAGAGGAAAAATCTGAACCAGTATTGGA
AGAAGCTCCTCCTGAGGATCCTCAAAAAAATTCTTCCCCAGCACCTGCAGACATAGCTCAGACTGTACAGGAAGACTTGA
GGACATTTTCTTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGGAGCTGTTCCTGTTACCGGGATACCACCTCAT
GTTGTTAAAATACCGGCTTCACAGCCCCGTCTAGAGTCTAAGCCTGAATCTCAGATTCCACCACAGAGGCCTCAGAGGGA
TCAAAGAGTGCGAGAACAACGAATAAATATTCCTCCACAGAGAGGACCTAGACCAATCCGTGAGGCTGGTGAGCAAGGGG
ATGTTGAACCCCGAAGAATCGTGAGACACCGTGACAGTCACCAGCTCTTCATTGGCAACCTGCCTCATGAGGTGGACAAA
TCAGAACTTAAAGATTTCTTTCAAAATTATGGGAATGTGGTGGAGCTGCGCATTAACAGTGGTGGGAAATTACCTAATTT
TGGTTTTGTTGTGTTTGATGACTCTGAACCTGTTCAGAAGGTCCTTAGCAACAGGCCCATCATGTTCAGAGGTGAGGTTC
GTCTGAATGTGGAAGAGAAGAAGACACGAGCAGCCAGGGAAGGCGACCGTAGAGATAACCGCCTGGGACCCGGAGGCCCT
CGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCTCGTGGAGGCATGGTGCAGAAACCAGGATTTGGAGTGGGAAGAGG
GATTGCTCCAAGGCAGTGA
TTTTATGGAAAAAACTCTTCTTATGTCCATGGGGGATTGGATTCAAATGGAAAACCAGCAGATGCGGTCTATGGACAGAA
AGAAATCCATAGGAAAGTGATGTCACAGAACTTTACCAACTGCCATACTAAGATTCGCCATGTTGATGCTCATGCCACTC
TAAATGATGGTGTGGTGGTACAGGTGATGGGACTGCTGTCTAATAACAACCAGGCTTTGAGGAGATTCATGCAGACTTTT
GTCCTTGCTCCTGAGGGCTCTGTGGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACCAAGATGAGGTCTTTGG
TGGCTTTGTCACTGAGCCTCAAGAGGAGTCTGAGGAAGAAGTAGAGGAACCTGAGGAAAGACAGCAAACACCAGAGGTGG
TACCCGAGGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAAGAACATTTAGAGGAACCTGTTGCTGAG
CCAGAGCCCGATCCTGAACCAGAACCGGAGCAAGAACCTGTATCTGAAATCCAAGAGGAAAAATCTGAACCAGTATTGGA
AGAAGCTCCTCCTGAGGATCCTCAAAAAAATTCTTCCCCAGCACCTGCAGACATAGCTCAGACTGTACAGGAAGACTTGA
GGACATTTTCTTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGGAGCTGTTCCTGTTACCGGGATACCACCTCAT
GTTGTTAAAATACCGGCTTCACAGCCCCGTCTAGAGTCTAAGCCTGAATCTCAGATTCCACCACAGAGGCCTCAGAGGGA
TCAAAGAGTGCGAGAACAACGAATAAATATTCCTCCACAGAGAGGACCTAGACCAATCCGTGAGGCTGGTGAGCAAGGGG
ATGTTGAACCCCGAAGAATCGTGAGACACCGTGACAGTCACCAGCTCTTCATTGGCAACCTGCCTCATGAGGTGGACAAA
TCAGAACTTAAAGATTTCTTTCAAAATTATGGGAATGTGGTGGAGCTGCGCATTAACAGTGGTGGGAAATTACCTAATTT
TGGTTTTGTTGTGTTTGATGACTCTGAACCTGTTCAGAAGGTCCTTAGCAACAGGCCCATCATGTTCAGAGGTGAGGTTC
GTCTGAATGTGGAAGAGAAGAAGACACGAGCAGCCAGGGAAGGCGACCGTAGAGATAACCGCCTGGGACCCGGAGGCCCT
CGAGGTGGGCTGGGTGGTGGAATGAGAGGCCCTCCTCGTGGAGGCATGGTGCAGAAACCAGGATTTGGAGTGGGAAGAGG
GATTGCTCCAAGGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 61 .26 RPM |
| SRP012922_cerebellum | 16 .22 RPM |
| SRP012922_heart | 18 .10 RPM |
| SRP012922_kidney | 23 .00 RPM |
| SRP012922_liver | 16 .41 RPM |
| SRP012922_lung | 36 .35 RPM |
| SRP012922_quadricep_muscle | 29 .42 RPM |
| SRP012922_spleen | 52 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000006626 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000017447 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000145907 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000012235 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013661 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022143 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001726 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015968 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017438 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000017250 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013186 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000004386 | ortholog_one2one | 12 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004570 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009072 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_526 | 73.71 | 53.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1492 | 96.04 | 63.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1632 | 73.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000018758 retrocopies