RetrogeneDB ID: | retro_nleu_1205 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397284.1:19731536..19731780(-) | ||
Located in intron of: | ENSNLEG00000004487 | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000004562 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSNLEG00000015481 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY |
MAKHHPDLIFC.KQ.G.AI.RLCEKCDGKCVICDSYVRPC.L..ICDE.NYGSY.G.CVICGGPGVSDA. | |
Retrocopy | MAKHHPDLIFCCKQTGIAIRRLCEKCDGKCVICDSYVRPCALMHICDERNYGSYHGCCVICGGPGVSDAC |
Parental | YCKE-CTIQEKD |
YCKE.CTIQE.D | |
Retrocopy | YCKE>CTIQEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015687 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001090 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004999 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010741 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000012094 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013520 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016398 | 2 retrocopies | |
Mus musculus | ENSMUSG00000061360 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015481 | 2 retrocopies |
retro_nleu_1205 , retro_nleu_653,
|
Oryctolagus cuniculus | ENSOCUG00000012705 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002839 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001162 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000024170 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000001082 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003369 | 1 retrocopy |