Parental gene:

Phf5a, ENSRNOG00000024170

Aliases:Phf5a, Ac2-246
Description:PHD finger-like domain-containing protein 5A [Source:UniProtKB/Swiss-Prot;Acc:P83871]
Organism:Rat (Rattus norvegicus)
Coordinates:7:123070682..123077281(-)


>ENSRNOG00000024170
ATGGCTAAACATCATCCAGATTTGATTTTCTGCCGCAAGCAGGCTGGTGTAGCTATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAATGTGTGATCTGCGATTCCTACGTGCGTCCCTGTACCCTGGTTCGCATATGTGATGAGTGTAACTATGGATCCT
ACCAGGGCCGCTGCGTGATCTGTGGAGGTCCCGGAGTCTCTGATGCCTACTATTGTAAAGAGTGCACCATTCAGGAGAAG
GATAGAGATGGTTGCCCAAAGATTGTCAATTTGGGGAGCTCTAAGACAGACCTGTTCTATGAGCGCAAAAAATACGGTTT
CAAGAAGAGGTGA

Library Parental gene expression (RPM)
SRP017611_liver 11 .03 RPM
SRP017611_kidney 20 .66 RPM
SRP017611_brain 12 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015687 ortholog_one2one 1 retrogene
retro_amel_1674,
Canis familiaris ENSCAFG00000001090 ortholog_one2one 1 retrogene
retro_cfam_369,
Callithrix jacchus ENSCJAG00000004999 ortholog_one2many 3 retrogenes
retro_cjac_1194, retro_cjac_1527, retro_cjac_906,
Echinops telfairi ENSETEG00000010741 ortholog_one2one 1 retrogene
retro_etel_102,
Homo sapiens ENSG00000100410 ortholog_one2one 3 retrogenes
retro_hsap_2033, retro_hsap_2647, retro_hsap_2829,
Gorilla gorilla ENSGGOG00000001104 ortholog_one2one 2 retrogenes
retro_ggor_1848, retro_ggor_1965,
Latimeria chalumnae ENSLACG00000012094 ortholog_one2one 1 retrogene
retro_lcha_25,
Microcebus murinus ENSMICG00000013520 ortholog_one2one 1 retrogene
retro_mmur_758,
Macaca mulatta ENSMMUG00000011354 ortholog_one2one 3 retrogenes
retro_mmul_1390, retro_mmul_1471, retro_mmul_1503,
Mustela putorius furo ENSMPUG00000016398 ortholog_one2one 2 retrogenes
retro_mputfur_359, retro_mputfur_439,
Mus musculus ENSMUSG00000061360 ortholog_one2one 3 retrogenes
retro_mmus_1070, retro_mmus_1071, retro_mmus_1155,
Nomascus leucogenys ENSNLEG00000015481 ortholog_one2one 2 retrogenes
retro_nleu_1205, retro_nleu_653,
Oryctolagus cuniculus ENSOCUG00000012705 ortholog_one2one 1 retrogene
retro_ocun_640,
Otolemur garnettii ENSOGAG00000002839 ortholog_one2many 1 retrogene
retro_ogar_55,
Pongo abelii ENSPPYG00000011870 ortholog_one2one 2 retrogenes
retro_pabe_1661, retro_pabe_2324,
Pan troglodytes ENSPTRG00000014427 ortholog_one2one 3 retrogenes
retro_ptro_1352, retro_ptro_1917, retro_ptro_2479,
Pteropus vampyrus ENSPVAG00000001162 ortholog_one2one 1 retrogene
retro_pvam_66,
Tarsius syrichta ENSTSYG00000001082 ortholog_one2one 1 retrogene
retro_tsyr_259,
Tursiops truncatus ENSTTRG00000003369 ortholog_one2one 1 retrogene
retro_ttru_1483,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2660 70.83 86.36
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2. retro_rnor_2704 93.90 74.55
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3. retro_rnor_2712 70.83 86.36
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Download FASTA sequences of all ENSRNOG00000024170 retrocopies