RetrogeneDB ID: | retro_mmus_1070 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:120149378..120149708(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phf5a | ||
Ensembl ID: | ENSMUSG00000061360 | ||
Aliases: | None | ||
Description: | PHD finger protein 5A [Source:MGI Symbol;Acc:MGI:2156864] |
Percent Identity: | 85.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY |
MAKHHPDLIFCRKQ.GVAI.RLCEK.D.KCVICDSYV.PCTLV.ICD.CNYGSYQGRCVIC.GP.VS.AY | |
Retrocopy | MAKHHPDLIFCRKQTGVAIRRLCEKTDSKCVICDSYVHPCTLVHICDKCNYGSYQGRCVICAGPRVSHAY |
Parental | YCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
YCKECTIQEKDR.GCPKIVNLGSSKTDLF....K.GFKKR | |
Retrocopy | YCKECTIQEKDRGGCPKIVNLGSSKTDLFNGCEK*GFKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .40 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .54 RPM |
SRP007412_heart | 0 .00 RPM | 14 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .09 RPM |
SRP007412_liver | 0 .00 RPM | 16 .36 RPM |
SRP007412_testis | 0 .00 RPM | 11 .85 RPM |