RetrogeneDB ID: | retro_cfam_369 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:67811978..67812294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSCAFG00000001090 | ||
Aliases: | None | ||
Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
Percent Identity: | 64.55 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AKHHPDLIFCRKQAGVAIGRL-CEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAY |
AKH...LI.C..Q...A...L.CE.CD.KCV.CDSYV..CT....CD.C.YGSY.G.CVICGGPGVSD.Y | |
Retrocopy | AKHDLGLISCHEQTDAAVQGL>CEECDVKCVVCDSYVGLCT----CDGCEYGSYRGCCVICGGPGVSDTY |
Parental | YCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR |
...EC...EKDRDGCPK...LGSS.TDLFYE.KKYG.KKR | |
Retrocopy | CYEECIV*EKDRDGCPKMASLGSSETDLFYECKKYGLKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 30 .37 RPM |
SRP017611_brain | 0 .00 RPM | 15 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .07 RPM |
SRP017611_liver | 0 .00 RPM | 11 .46 RPM |