RetrogeneDB ID: | retro_rnor_2712 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:3412317..3412601(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phf5a | ||
Ensembl ID: | ENSRNOG00000024170 | ||
Aliases: | Phf5a, Ac2-246 | ||
Description: | PHD finger-like domain-containing protein 5A [Source:UniProtKB/Swiss-Prot;Acc:P83871] |
Percent Identity: | 70.83 % |
Parental protein coverage: | 86.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQ-GRCVICGGPGVSDAYYCKECTIQ |
FC.KQA.VA..RLCEK.DGKCVICDSYV.PCTLV.ICDEC..GS.Q.G.CVI..G....DAY.CK.C.I. | |
Retrocopy | FCYKQACVAFRRLCEK*DGKCVICDSYV*PCTLVCICDECDFGSNQ<GCCVIIEGSEFFDAYSCKQCIIL |
Parental | EKDRDGCPKIVNLGSSKTDLFYERKK |
EKDRD.CPK.VNLGSSK..LFYE.K. | |
Retrocopy | EKDRDCCPKFVNLGSSKRALFYEHKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .66 RPM |
SRP017611_liver | 0 .00 RPM | 11 .03 RPM |