RetrogeneDB ID: | retro_nleu_751 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397272.1:30280255..30281492(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA5 | ||
Ensembl ID: | ENSNLEG00000017348 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.3 % |
Parental protein coverage: | 63.3 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | VFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIE |
VF.VVATNGDTHLGGE.FDQ.VME.FIKLYKK.T.KDVRKDNRAVQKL..EVEKA..ALS.QHQARIEIE | |
Retrocopy | VFGVVATNGDTHLGGENFDQCVMELFIKLYKKRTDKDVRKDNRAVQKLQQEVEKARWALSPQHQARIEIE |
Parental | SFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFN |
SFYEGEDFSETL.RAKF.ELNMDLF.ST.KP...VLE.SDLKKS.IDE.VL.GGSTRIPKIQQLVK..FN | |
Retrocopy | SFYEGEDFSETLARAKF*ELNMDLFCSTLKPIH*VLENSDLKKSNIDEVVL-GGSTRIPKIQQLVKKSFN |
Parental | GKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQI |
GKEPS..IN.DEAV.YGAAVQAGVLSGDQDTGDLVLLDVCPL.LGIETV.GVM.KLIPRNTVVPTK.SQI | |
Retrocopy | GKEPSHSINTDEAVVYGAAVQAGVLSGDQDTGDLVLLDVCPLILGIETVRGVMIKLIPRNTVVPTKTSQI |
Parental | FSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGN |
F.TASDNQPTV.IKVYE.E.PLTKD.HLLGT.DLTGIPPAPRGVPQIEVTFEIDVNGIL.V.AEDKGTGN | |
Retrocopy | FCTASDNQPTVMIKVYEDE*PLTKDIHLLGTIDLTGIPPAPRGVPQIEVTFEIDVNGIL*VAAEDKGTGN |
Parental | KNKITITNDQNRLTPEEIERMVNDAEKFAEED-KKLKERIDSRNELESYAYSLKNQIGDKEKLGGKLSSE |
KNKITITNDQNRLTPEEI.RMVNDAEKFA.ED...LKE.ID.RNELES.AYSLKNQIGDKEKLGGKLSSE | |
Retrocopy | KNKITITNDQNRLTPEEIKRMVNDAEKFAGED<HQLKECIDTRNELESFAYSLKNQIGDKEKLGGKLSSE |
Parental | DKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAGPP-PTGEEDTAEKDEL |
DKETME.AVEEKIEWLESHQ..DIED.KAKKK.LEEIVQ.IISKLYGSAGPP.P..EEDTAEKDEL | |
Retrocopy | DKETMEEAVEEKIEWLESHQASDIEDVKAKKK*LEEIVQSIISKLYGSAGPP<PSSEEDTAEKDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006880 | 1 retrocopy | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001000 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016702 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007419 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017348 | 1 retrocopy |
retro_nleu_751 ,
|
Otolemur garnettii | ENSOGAG00000006786 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019609 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000563 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011243 | 4 retrocopies |