RetrogeneDB ID: | retro_itri_1687 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393640.1:545346..546415(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA5 | ||
Ensembl ID: | ENSSTOG00000011243 | ||
Aliases: | None | ||
Description: | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:HGNC Symbol;Acc:5238] |
Percent Identity: | 75.9 % |
Parental protein coverage: | 54.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIE |
VF.V.ATN.DTH.G..DFDQ.VM.HFI.LYKKKTGK..RK.NRAVQKL..EVEKAK.ALS.QH.ARI.IE | |
Retrocopy | VFKVMATNRDTHRGENDFDQHVMKHFIRLYKKKTGKYGRKENRAVQKLQHEVEKAKWALSAQH*ARIKIE |
Parental | SFYEGEDFSETLTRAKFEEL-NMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFF |
.FYEGEDFSE.LT.AKFE...NM.LF.STMKPVQKVLE.SDL.KS.IDEIV.VGGS..IPKIQQLVK.FF | |
Retrocopy | FFYEGEDFSEILTQAKFEDK<NMVLFWSTMKPVQKVLENSDL*KSNIDEIVIVGGSSQIPKIQQLVKVFF |
Parental | NGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQ |
N.KEP..GINPDEAVAYG..VQAGVLS.DQDTGDL.LLDVCPLT.GIETVGGVMTK.IPRNTVVPTK.SQ | |
Retrocopy | NDKEPFCGINPDEAVAYGDTVQAGVLSDDQDTGDLALLDVCPLTFGIETVGGVMTKVIPRNTVVPTK*SQ |
Parental | IFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQI-EVTFEIDVNGILRVTAEDKGT |
IFSTASD.QPT..I.VYEG..PL.KDNHL.G.FDL.GI.....G.P...EVTFE..VN.I..VTAED.GT | |
Retrocopy | IFSTASDKQPTIPIEVYEGKGPLKKDNHLPGIFDLIGILSV--GSPRL<EVTFELHVNAIFWVTAEDRGT |
Parental | GNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSS |
.NKNKITITNDQN.LT.E.IE.MVND.EKFAE.DK.LKE..D.RNEL.SYAYSLK.QI.DKEKL.GKLS. | |
Retrocopy | ENKNKITITNDQNCLTLEKIENMVNDVEKFAEGDKSLKEHTDSRNELKSYAYSLKYQIEDKEKLRGKLST |
Parental | EDKETMEKAVE |
EDK.T.EK.VE | |
Retrocopy | EDKGTIEKDVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006880 | 1 retrocopy | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001000 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016702 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006786 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019609 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000563 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003756 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011243 | 4 retrocopies |