RetrogeneDB ID: | retro_pabe_2491 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:170569200..170570438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA5 | ||
Ensembl ID: | ENSPPYG00000019609 | ||
Aliases: | HSPA5, GRP78 | ||
Description: | 78 kDa glucose-regulated protein precursor [Source:RefSeq peptide;Acc:NP_001126927] |
Percent Identity: | 80.62 % |
Parental protein coverage: | 63.46 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | RITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQ |
RIT..YVAFT.EGE..IGDAAKNQLTSNP.NTVFDA...IGRTW.D.SV.Q.I.FLPFK.VEKKTKP.IQ | |
Retrocopy | RITRCYVAFTLEGEHVIGDAAKNQLTSNPKNTVFDANWFIGRTWKDLSV*QNIRFLPFKLVEKKTKPNIQ |
Parental | VDIGGGQ-TKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRI |
.DI.GG...KT.APEEISAMVLT.MK.TAEAYL.KK.THAVVT.PAYFNDAQ.QATKD.GTIA.LNVMRI | |
Retrocopy | ADI-GGG<AKTPAPEEISAMVLTEMK*TAEAYLRKKFTHAVVTFPAYFNDAQCQATKDIGTIAELNVMRI |
Parental | INEPTAAAIAYGLDKREGEK-NILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFI |
I.EP.AAAIAYGLDKRE.EK..I..F.LGG.TF..S.LTIDNGVF.VVATNGDTHLGGE.FDQRVMEHFI | |
Retrocopy | IHEPMAAAIAYGLDKREREK<DIPLFHLGGRTFNASPLTIDNGVFGVVATNGDTHLGGEAFDQRVMEHFI |
Parental | KLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEEL-NMDLFR |
KLY.KKT.KDVRKD.RAVQKL...VEKAKRALS.QHQARIEIESF.EGEDFSETL.RAKF.EL.NMDLFR | |
Retrocopy | KLYQKKTDKDVRKDDRAVQKLQLQVEKAKRALSPQHQARIEIESFCEGEDFSETLARAKF*EL>NMDLFR |
Parental | STMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLS |
STMKPVQKVLE............VL.GGST.IPKI.QLVK..FNGKE.S.GINPDEAV..GAAVQAGVLS | |
Retrocopy | STMKPVQKVLEXXXXXXXXXXXVVL-GGSTQIPKIPQLVKKSFNGKESSHGINPDEAVVRGAAVQAGVLS |
Parental | GDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTK |
GDQDTGDLVLLDVCPLTLGIETVGGVM.KLIPRNTVVPTK.SQIFSTASDNQ.TVTIKVYE.ERPLT. | |
Retrocopy | GDQDTGDLVLLDVCPLTLGIETVGGVMIKLIPRNTVVPTKNSQIFSTASDNQLTVTIKVYEDERPLTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 193 .90 RPM |
SRP007412_cerebellum | 0 .24 RPM | 166 .47 RPM |
SRP007412_heart | 0 .06 RPM | 309 .67 RPM |
SRP007412_kidney | 0 .07 RPM | 512 .98 RPM |
SRP007412_liver | 0 .34 RPM | 1997 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3005 |
Pan troglodytes | retro_ptro_2033 |
Gorilla gorilla | retro_ggor_2082 |
Callithrix jacchus | retro_cjac_2221 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006880 | 1 retrocopy | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001000 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016702 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006786 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003987 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000019609 | 1 retrocopy |
retro_pabe_2491 ,
|
Pan troglodytes | ENSPTRG00000000563 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011243 | 4 retrocopies |