RetrogeneDB ID: | retro_itri_1689 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393640.1:904246..905480(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA5 | ||
Ensembl ID: | ENSSTOG00000011243 | ||
Aliases: | None | ||
Description: | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:HGNC Symbol;Acc:5238] |
Percent Identity: | 78.47 % |
Parental protein coverage: | 63.3 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | VFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNR-AVQKLRREVEKAKRALSSQHQARIEI |
VF.V.ATN.DTH.G.EDFDQRVMEHFI.LYKKKTGK..R.....AVQKL..E.EKAK.ALS.QH.ARI.I | |
Retrocopy | VFKVMATNRDTHRGEEDFDQRVMEHFIRLYKKKTGKYGRXXXE<AVQKLQHEIEKAKWALSAQH*ARIKI |
Parental | ESFYEGEDFSETLTRAKFEEL-NMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEF |
E.FYEGEDFSE.LT.AKFEE..NM.LF.ST.KPVQKVLEDSDL.KS.ID.IVLVGG...IPKIQQLVKEF | |
Retrocopy | EFFYEGEDFSEILTKAKFEEK<NMVLFWSTIKPVQKVLEDSDL*KSNIDKIVLVGGCSQIPKIQQLVKEF |
Parental | FNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKS |
FNGKEP..GINPDEAVAYG..VQ.GVL...QDTGDL.LLDVCPLT.GIETVGGVMTK.IPRNTVVPTK.S | |
Retrocopy | FNGKEPFCGINPDEAVAYGDTVQVGVLFDNQDTGDLALLDVCPLTFGIETVGGVMTKVIPRNTVVPTK*S |
Parental | QIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVP-QIEVTFEIDVNGILRVTAEDKG |
QIFSTASD.QPT..IKVYE...PL.KDNHL.GTFDLTGIPP...G.P.QIEVTFEI.VN.IL.VTAEDKG | |
Retrocopy | QIFSTASDKQPTIPIKVYESKGPLNKDNHLPGTFDLTGIPPV--GSP<QIEVTFEIHVNAILWVTAEDKG |
Parental | TGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLS |
T.NKNKITI.NDQN.LT.E.IE.MVND.EKFAE.DK.LKE..D.RNEL.SYAYSLK.QIGDKEKL.GKL. | |
Retrocopy | TENKNKITIINDQNCLTLEKIEKMVNDVEKFAEGDKSLKEHTDSRNELKSYAYSLK*QIGDKEKLRGKL* |
Parental | SEDKETMEKAVEEKIEWLESHQDADIEDFKA-KKKELEEIVQPIISKLYGSAGPPPTGEEDTSERDEL |
SEDK.TMEKAVEEKIEWLESHQ.ADIEDFK..KKKELEEIV.PI.SK..GS.GPPPTGEED...RDEL | |
Retrocopy | SEDKGTMEKAVEEKIEWLESHQKADIEDFKT>KKKELEEIVHPISSKFCGSVGPPPTGEEDRAKRDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006880 | 1 retrocopy | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001000 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016702 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006786 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019609 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000563 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003756 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011243 | 4 retrocopies |