RetrogeneDB ID: | retro_itri_1686 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393640.1:313226..314460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA5 | ||
Ensembl ID: | ENSSTOG00000011243 | ||
Aliases: | None | ||
Description: | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:HGNC Symbol;Acc:5238] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 63.3 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | VFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIE |
VF.V.ATN.DTH.G.EDFD.RV.EHFI.LYKKKTGK..RK.NRAV.KL....EKAK.ALS.QH.ARI.IE | |
Retrocopy | VFKVIATNRDTHRGEEDFD*RVIEHFIRLYKKKTGKYGRKENRAVKKLQHKLEKAKWALSAQH*ARIRIE |
Parental | SFYEGEDFSETLTRAKFEEL-NMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFF |
.FYEGEDFSE.LT.AKFEE..NM.LF.STMKPVQKVLEDSDL.KS.ID.IVLVG.S..IPKIQQLVKEFF | |
Retrocopy | FFYEGEDFSEILTQAKFEEK<NMVLFWSTMKPVQKVLEDSDL*KSNIDKIVLVGVSSQIPKIQQLVKEFF |
Parental | NGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQ |
NGKEP..GINPDEAVAYG..VQAGVLS.DQDTGDL.LLDVCPLT.GIETV.GVMTK.IPRNTVVPTK.SQ | |
Retrocopy | NGKEPFCGINPDEAVAYGDTVQAGVLSDDQDTGDLDLLDVCPLTFGIETVEGVMTKVIPRNTVVPTK*SQ |
Parental | IFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVP-QIEVTFEIDVNGILRVTAEDKGT |
IFSTASD.QPT..IKVYEG..PL.K.NHL.GTFDLTGIPP...G.P.QIEVTFEI.VN.IL.V.A.DKGT | |
Retrocopy | IFSTASDKQPTIPIKVYEGKGPLKKNNHLPGTFDLTGIPPV--GSP<QIEVTFEIHVNAILWVIAKDKGT |
Parental | GNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSS |
.NKN.ITITNDQN.LT.EEI...VND.EKFAE.DK.LKE..D.RNEL.SYAYSLK.QI.DKEKL.GKLS. | |
Retrocopy | ENKNNITITNDQNCLTLEEIKKIVNDVEKFAEGDKSLKELTDSRNELKSYAYSLKYQIEDKEKLRGKLST |
Parental | EDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAGPPPTGEEDTSERDEL |
EDK.T.EK.VEEKIEWLESHQ.ADIEDF......LEEIV.PI.SK.YGS.GPPPTGEE...ERDEL | |
Retrocopy | EDKGTIEKDVEEKIEWLESHQEADIEDFXXXXXXLEEIVHPISSKFYGSVGPPPTGEENRAERDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006880 | 1 retrocopy | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Gallus gallus | ENSGALG00000001000 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016702 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006786 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019609 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000563 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003756 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011243 | 4 retrocopies |