RetrogeneDB ID:

retro_nleu_781

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397273.1:6814098..6814609(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL35
Ensembl ID:ENSNLEG00000002756
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_781
ATGGCTGCTTTTGCCTTTGCTGGTGCGGTGAGAGCAGCTTCAGGAATCCGATGTCCCTTGAATATTTTGGCATCTTCAGC
CTACCGAAACTGTGTCAAGAATGCCTCTCTTATTTCTGCATTGTCCACTGGACGTTTTAGTCATATTCAGACACCAGTTG
TTTCCTCCACTCCCAGACTTACCACATCTGAGAGAAACCTGACATGTGGGCATACTTCAGCGATCCTTAATAGAGTGTCC
CCCTTGCTTCCGAGTGTCCTGAAGCTGCCAGTCAGATCTCTAACATACTTCAGTACACGAAAAGACAAGAGAAAGACTGT
GAAAGCTGTCATCTACAGGTTTCTTCGACTTCATTGTGGCCTTTGGGTGAGGAGAAAGGCTGGTTATAAGAAAAAATTAT
GGAAAAAGGAACCTGCAAGAAAAAAGCGATTGAGGGAATTTGTATTCTGCAATAAAACCCAGAGTAAACTCTTAAGATAA
AATGGCGACGTCCTTCTGGGAGAGGTGAAAC

ORF - retro_nleu_781 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.64 %
Parental protein coverage: 81.73 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAASAFAGAVRAASGILRPLNILASSTYRNCVKNASLISAWSTGRFSHIQTPVVSSTPRLTTSERNLTCG
MAA.AFAGAVRAASGI..PLNILASS.YRNCVKNASLISA.STGRFSHIQTPVVSSTPRLTTSERNLTCG
RetrocopyMAAFAFAGAVRAASGIRCPLNILASSAYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTCG
ParentalHTSAILNRVAPVLPSVVKLPVRFLTYFSARKGKRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKKTPAR
HTSAILNRV.P.LPSV.KLPVR.LTYFS.RK.KRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKK.PAR
RetrocopyHTSAILNRVSPLLPSVLKLPVRSLTYFSTRKDKRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKKEPAR
ParentalKKRLREFVFCNKTQSKLL-DKMTTSFWKRRN
KKRLREFVFCNKTQSKLL.DKM.TSFW.R.N
RetrocopyKKRLREFVFCNKTQSKLL>DKMATSFWER*N

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_781 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000194671 retrocopy
Dasypus novemcinctus ENSDNOG000000083291 retrocopy
Macropus eugenii ENSMEUG000000047731 retrocopy
Mus musculus ENSMUSG000000529621 retrocopy
Nomascus leucogenys ENSNLEG00000002756 4 retrocopies
Otolemur garnettii ENSOGAG000000040481 retrocopy
Pongo abelii ENSPPYG000000122145 retrocopies
Rattus norvegicus ENSRNOG000000085461 retrocopy
Tupaia belangeri ENSTBEG0000001536610 retrocopies
Tarsius syrichta ENSTSYG000000077132 retrocopies



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