RetrogeneDB ID: | retro_pabe_2837 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:14460952..14461459(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL35 | ||
Ensembl ID: | ENSPPYG00000012214 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:14489] |
Percent Identity: | 80.7 % |
Parental protein coverage: | 81.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAASAFAGAVRAASGILRPLNILASSTYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLPTSERNLTCG |
MAASAFA.AVRAASGIL.PLNILASS.Y.NCVKNASLISALSTGRFSHIQTPVVSS.PRL.TS.RNLTCG | |
Retrocopy | MAASAFASAVRAASGIL*PLNILASSAYQNCVKNASLISALSTGRFSHIQTPVVSSAPRLTTSVRNLTCG |
Parental | -HTSVILNRVAPVLPSVLKLPVRSLTYFSARKGKRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKK-TP |
.H..VI.NRVAP.LPSVLKLPVRSLT.....KGKR.TVKAVIYRFL.LH.GLW..RK.GYKKKL.KK.T. | |
Retrocopy | <HPAVIFNRVAPLLPSVLKLPVRSLTFICTQKGKRRTVKAVIYRFL*LHSGLWLKRKSGYKKKLRKK>TL |
Parental | ARKKRLREFVFCNKTQSKLLDKMTTSFWKRR |
ARKKRLRE.V.C.K.QS.LLDKM..SFWKRR | |
Retrocopy | ARKKRLRESVLCSKPQSILLDKMMMSFWKRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .93 RPM |
SRP007412_cerebellum | 0 .12 RPM | 10 .34 RPM |
SRP007412_heart | 0 .00 RPM | 12 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .57 RPM |
SRP007412_liver | 0 .00 RPM | 10 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3424 |
Pan troglodytes | retro_ptro_2325 |
Gorilla gorilla | retro_ggor_2315 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019467 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008329 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004773 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052962 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002756 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004048 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012214 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000008546 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015366 | 10 retrocopies | |
Tarsius syrichta | ENSTSYG00000007713 | 2 retrocopies |