RetrogeneDB ID: | retro_pabe_541 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:72077743..72078253(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL35 | ||
Ensembl ID: | ENSPPYG00000012214 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:14489] |
Percent Identity: | 88.95 % |
Parental protein coverage: | 81.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAASAFAGAVRAASGILRPLNILASSTYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLPTSERNLTCG |
MAA.AFAGAVRAASGI..PLNILASS.Y.NCVKNASLISALSTGRFSHIQTPVVSSTPRL.TSERNLTCG | |
Retrocopy | MAAFAFAGAVRAASGI*WPLNILASSAYQNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTCG |
Parental | HTSVILNRVAPVLPSVLKLPVRSLTYFSARKGKRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKKTPAR |
HTS.ILNRV.P.LPSVLKLPVRSLTYFS.RK.KRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKK.PAR | |
Retrocopy | HTSAILNRVSPLLPSVLKLPVRSLTYFSTRKDKRKTVKAVIYRFLRLHCGLWVRRKAGYKKKLWKKEPAR |
Parental | -KKRLREFVFCNKTQSKLL-DKMTTSFWKRRN |
.KK.LREFVFCNKTQSKLL.DK..TSFW.R.N | |
Retrocopy | <KKGLREFVFCNKTQSKLL>DKVATSFWER*N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .93 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .34 RPM |
SRP007412_heart | 0 .00 RPM | 12 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .57 RPM |
SRP007412_liver | 0 .00 RPM | 10 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_681 |
Pan troglodytes | retro_ptro_489 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019467 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008329 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004773 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052962 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002756 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004048 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012214 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000008546 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015366 | 10 retrocopies | |
Tarsius syrichta | ENSTSYG00000007713 | 2 retrocopies |