RetrogeneDB ID: | retro_ocun_1653 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018743:534873..535104(-) | ||
Located in intron of: | ENSOCUG00000015800 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0E1 | ||
Ensembl ID: | ENSOCUG00000006174 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 [Source:HGNC Symbol;Acc:863] |
Percent Identity: | 61.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCS-VCCYLFWLIAILAQLNPL-FGPQL |
MAY....V....M....GF...LVPWFIP.GP..GVII..L.TCS....YLFWL..IL.QL.PL.FGPQ. | |
Retrocopy | MAYRSFRVACTLM----GFDSCLVPWFIPQGPSWGVIISTLMTCS<IFGYLFWLMVILVQLSPL>FGPQ* |
Parental | KNETIWYLKYHWP |
.NETIWYLKYHWP | |
Retrocopy | TNETIWYLKYHWP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 105 .11 RPM |
SRP017611_liver | 0 .00 RPM | 29 .13 RPM |