RetrogeneDB ID: | retro_ocun_1621 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018719:2741734..2742168(+) | ||
Located in intron of: | ENSOCUG00000015158 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022619 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 94.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQK-YNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MKF.PFVTSD.SKN.KRHFNAPSHIRRKIMSSPLSKELRQ...NVRSMPIRKDDEVQVVRGHYKGQQIGK | |
Retrocopy | MKFSPFVTSDQSKNQKRHFNAPSHIRRKIMSSPLSKELRQE<VNVRSMPIRKDDEVQVVRGHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE.KAKSRQVGKEKGKYKEET | |
Retrocopy | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILEQKAKSRQVGKEKGKYKEET |
Parental | IEKMQE |
IEK.QE | |
Retrocopy | IEKIQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .39 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .71 RPM | 294 .24 RPM |
SRP017611_liver | 0 .46 RPM | 44 .86 RPM |