RetrogeneDB ID: | retro_ocun_542 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:154193019..154193451(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 85.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSD.SKN.KRHFNAPSHIRRKIMSSPLSKELRQKYN..SMPI.KDDEVQ.VRGHYKG..IGKV | |
Retrocopy | MKFNPFVTSDGSKNQKRHFNAPSHIRRKIMSSPLSKELRQKYNE*SMPIQKDDEVQIVRGHYKGEKIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQ.YRKKY.I.IE.VQREKA.G.T.HVGIHPSKVVITRLKLD.D.KKILE.KAKSRQVGK.K.KYKEETI | |
Retrocopy | VQIYRKKYIIHIEQVQREKASG-TFHVGIHPSKVVITRLKLDEDHKKILEQKAKSRQVGKVKNKYKEETI |
Parental | EKMQE |
EK.QE | |
Retrocopy | EKTQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 294 .24 RPM |
SRP017611_liver | 0 .00 RPM | 44 .86 RPM |